RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	URN1	Q06525	465 aa	Known RBP	4.82	□□□□□ -1.64
UBX5	YDR330W	TYS1	P36421	394 aa	Known RBP	4.81	□□□□□ -1.64
UBX5	YDR330W	QNS1	P38795	714 aa	Known RBP	4.81	□□□□□ -1.64
UBX5	YDR330W	SIT1	P39980	628 aa		4.81	□□□□□ -1.64
UBX5	YDR330W	UBP6	P43593	499 aa	Known RBP	4.81	□□□□□ -1.64
UBX5	YDR330W	YGR045C	P53229	120 aa		4.81	□□□□□ -1.64
UBX5	YDR330W	DUS3	Q06053	668 aa	Known RBP	4.81	□□□□□ -1.64
UBX5	YDR330W	SPO21	Q12411	609 aa		4.81	□□□□□ -1.64
UBX5	YDR330W	TY4B-P	A0A0B7P3V8	1104 aa		4.8	□□□□□ -1.64
UBX5	YDR330W	GPM1	P00950	247 aa	Known RBP	4.8	□□□□□ -1.64
UBX5	YDR330W	TOP3	P13099	656 aa		4.8	□□□□□ -1.64
UBX5	YDR330W	ERS1	P17261	260 aa		4.8	□□□□□ -1.64
UBX5	YDR330W	MRC1	P25588	1096 aa		4.8	□□□□□ -1.64
UBX5	YDR330W	PGM2	P37012	569 aa	Known RBP	4.8	□□□□□ -1.64
UBX5	YDR330W	YBR284W	P38150	797 aa		4.8	□□□□□ -1.64
UBX5	YDR330W	ACO2	P39533	789 aa		4.8	□□□□□ -1.64
UBX5	YDR330W	NOP2	P40991	618 aa	Known RBP	4.8	□□□□□ -1.64
UBX5	YDR330W	PMT3	P47190	753 aa		4.8	□□□□□ -1.64
UBX5	YDR330W	MAL11	P53048	616 aa		4.8	□□□□□ -1.64
UBX5	YDR330W	DSE4	P53753	1117 aa		4.8	□□□□□ -1.64
UBX5	YDR330W	ELA1	P53861	379 aa	Predicted RBP	4.8	□□□□□ -1.64
UBX5	YDR330W	SRP1	Q02821	542 aa	Known RBP	4.8	□□□□□ -1.64
UBX5	YDR330W	RSA3	Q05942	220 aa	Known RBP	4.8	□□□□□ -1.64
UBX5	YDR330W	ATG13	Q06628	738 aa		4.8	□□□□□ -1.64
UBX5	YDR330W	YOR223W	Q12015	292 aa		4.8	□□□□□ -1.64
UBX5	YDR330W	TY4A-H	Q6Q5P6	413 aa		4.8	□□□□□ -1.64
UBX5	YDR330W	ADE8	P04161	214 aa		4.79	□□□□□ -1.64
UBX5	YDR330W	NNK1	P36003	928 aa		4.79	□□□□□ -1.64
UBX5	YDR330W	PET10	P36139	283 aa		4.79	□□□□□ -1.64
UBX5	YDR330W	PNT1	P38969	423 aa		4.79	□□□□□ -1.64
UBX5	YDR330W	DSS1	P39112	969 aa		4.79	□□□□□ -1.64
UBX5	YDR330W	NUG1	P40010	520 aa	Known RBP	4.79	□□□□□ -1.64
UBX5	YDR330W	MDM12	Q92328	271 aa		4.79	□□□□□ -1.64
UBX5	YDR330W	NHA1	Q99271	985 aa		4.79	□□□□□ -1.64
UBX5	YDR330W	YLR419W	Q06698	1435 aa	Known RBP	4.79	□□□□□ -1.64
UBX5	YDR330W	NUP145	P49687	1317 aa		4.79	□□□□□ -1.64
UBX5	YDR330W	RPL11A	P0C0W9	174 aa	Known RBP	4.78	□□□□□ -1.64
UBX5	YDR330W	YER152C	P10356	443 aa		4.78	□□□□□ -1.64
UBX5	YDR330W	MSD1	P15179	658 aa	Known RBP	4.78	□□□□□ -1.64
UBX5	YDR330W	RET1	P22276	1149 aa	Known RBP	4.78	□□□□□ -1.64
UBX5	YDR330W	KIP1	P28742	1111 aa		4.78	□□□□□ -1.64
UBX5	YDR330W	GRX7	P38068	203 aa		4.78	□□□□□ -1.64
UBX5	YDR330W	YGR237C	P50089	785 aa		4.78	□□□□□ -1.64
UBX5	YDR330W	KIP3	P53086	805 aa	Known RBP	4.78	□□□□□ -1.64
UBX5	YDR330W	CAF120	P53836	1060 aa		4.78	□□□□□ -1.64
UBX5	YDR330W	YNL193W	P53870	558 aa		4.78	□□□□□ -1.64
UBX5	YDR330W	DOT1	Q04089	582 aa	Known RBP	4.78	□□□□□ -1.64
UBX5	YDR330W	HRK1	Q08732	759 aa	Known RBP	4.78	□□□□□ -1.64
UBX5	YDR330W	YPR071W	Q12346	211 aa		4.78	□□□□□ -1.64
UBX5	YDR330W	RPL11B	Q3E757	174 aa	Predicted RBP	4.78	□□□□□ -1.64
UBX5	YDR330W	YAP3	P38749	330 aa		4.77	□□□□□ -1.65
UBX5	YDR330W	ALG2	P43636	503 aa		4.77	□□□□□ -1.65
UBX5	YDR330W	LCD1	Q04377	747 aa		4.77	□□□□□ -1.65
UBX5	YDR330W	YLR257W	Q06146	321 aa	Known RBP	4.77	□□□□□ -1.65
UBX5	YDR330W	HAP1	P0CE41	1502 aa		4.77	□□□□□ -1.65
UBX5	YDR330W	RAD53	P22216	821 aa		4.77	□□□□□ -1.65
UBX5	YDR330W	YRO2	P38079	344 aa		4.77	□□□□□ -1.65
UBX5	YDR330W	SDA1	P53313	767 aa	Known RBP	4.77	□□□□□ -1.65
UBX5	YDR330W	MTC5	Q03897	1148 aa		4.77	□□□□□ -1.65
UBX5	YDR330W	PDS5	Q04264	1277 aa		4.77	□□□□□ -1.65
UBX5	YDR330W	YOL057W	Q08225	711 aa		4.77	□□□□□ -1.65
UBX5	YDR330W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.76	□□□□□ -1.65	not detected
UBX5	YDR330W	MEF1	P25039	761 aa		4.76	□□□□□ -1.65
UBX5	YDR330W	SMY2	P32909	740 aa	Known RBP	4.76	□□□□□ -1.65
UBX5	YDR330W	GPB2	P39717	880 aa		4.76	□□□□□ -1.65
UBX5	YDR330W	RPN3	P40016	523 aa	Known RBP	4.76	□□□□□ -1.65
UBX5	YDR330W	ACM1	Q08981	209 aa		4.76	□□□□□ -1.65
UBX5	YDR330W	THS1	P04801	734 aa	Known RBP	4.75	□□□□□ -1.65
UBX5	YDR330W	SPE2	P21182	396 aa		4.75	□□□□□ -1.65
UBX5	YDR330W	DBP2	P24783	546 aa	Known RBP	4.75	□□□□□ -1.65
UBX5	YDR330W	VBA3	P25594	458 aa		4.75	□□□□□ -1.65
UBX5	YDR330W	CDC12	P32468	407 aa	Known RBP	4.75	□□□□□ -1.65
UBX5	YDR330W	SAH1	P39954	449 aa	Known RBP	4.75	□□□□□ -1.65
UBX5	YDR330W	MXR1	P40029	184 aa		4.75	□□□□□ -1.65
UBX5	YDR330W	UME1	Q03010	460 aa		4.75	□□□□□ -1.65
UBX5	YDR330W	THI73	Q07904	523 aa		4.75	□□□□□ -1.65
UBX5	YDR330W	BCK1	Q01389	1478 aa		4.75	□□□□□ -1.65
UBX5	YDR330W	RAD9	P14737	1309 aa		4.75	□□□□□ -1.65
UBX5	YDR330W	TPM2	P40414	161 aa		4.74	□□□□□ -1.65
UBX5	YDR330W	JJJ3	P47138	172 aa		4.74	□□□□□ -1.65
UBX5	YDR330W	CCM1	P48237	864 aa	Predicted RBP	4.74	□□□□□ -1.65
UBX5	YDR330W	FOL1	P53848	824 aa		4.74	□□□□□ -1.65
UBX5	YDR330W	MLP1	Q02455	1875 aa	Known RBP	4.74	□□□□□ -1.65
UBX5	YDR330W	PRS1	P32895	427 aa	Known RBP	4.73	□□□□□ -1.65
UBX5	YDR330W	REC104	P33323	182 aa		4.73	□□□□□ -1.65
UBX5	YDR330W	RRM3	P38766	723 aa		4.73	□□□□□ -1.65
UBX5	YDR330W	YJL045W	P47052	634 aa		4.73	□□□□□ -1.65
UBX5	YDR330W	ALO1	P54783	526 aa	Known RBP	4.73	□□□□□ -1.65
UBX5	YDR330W	HOS3	Q02959	697 aa	Known RBP	4.73	□□□□□ -1.65
UBX5	YDR330W	FAP7	Q12055	197 aa	Predicted RBP	4.73	□□□□□ -1.65
UBX5	YDR330W	DNF3	Q12674	1656 aa		4.73	□□□□□ -1.65
UBX5	YDR330W	PRO1	P32264	428 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	SLA2	P33338	968 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	SPC29	P33419	253 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	YEL1	P34225	687 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	GPT2	P36148	743 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	UGA2	P38067	497 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	TOK1	P40310	691 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	DAM1	P53267	343 aa		4.72	□□□□□ -1.65
UBX5	YDR330W	TNA1	P53322	534 aa		4.72	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 10.4 ms