RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 SLC16A10Q8TF71 515 aa20.83■□□□□ 0.93
CHMP1A-204ENST00000547687 BCL11AQ9H165 835 aa20.83■□□□□ 0.93
CHMP1A-204ENST00000547687 PRKCSHP14314 528 aaPredicted RBP20.82■□□□□ 0.92
CHMP1A-204ENST00000547687 ZBTB47Q9UFB7 747 aaPredicted RBP20.82■□□□□ 0.92
CHMP1A-204ENST00000547687 SLC4A2P04920 1241 aa20.82■□□□□ 0.92
CHMP1A-204ENST00000547687 UBR2Q8IWV8 1755 aa20.81■□□□□ 0.92
CHMP1A-204ENST00000547687 SOS1Q07889 1333 aaPredicted RBP20.81■□□□□ 0.92
CHMP1A-204ENST00000547687 KCPQ6ZWJ8 1503 aa20.8■□□□□ 0.92
CHMP1A-204ENST00000547687 NECTIN2Q92692 538 aa20.8■□□□□ 0.92
CHMP1A-204ENST00000547687 CHMP4BQ9H444 224 aaKnown RBP20.8■□□□□ 0.92
CHMP1A-204ENST00000547687 POLD1P28340 1107 aa20.8■□□□□ 0.92
CHMP1A-204ENST00000547687 SYT17Q9BSW7 474 aa20.8■□□□□ 0.92
CHMP1A-204ENST00000547687 API5Q9BZZ5 524 aaKnown RBP20.8■□□□□ 0.92
CHMP1A-204ENST00000547687 CCDC30Q5VVM6 783 aa20.79■□□□□ 0.92
CHMP1A-204ENST00000547687 DNAJC10Q8IXB1 793 aa20.79■□□□□ 0.92
CHMP1A-204ENST00000547687 SSFA2P28290 1259 aa20.78■□□□□ 0.92
CHMP1A-204ENST00000547687 FLAD1Q8NFF5 587 aa20.78■□□□□ 0.92
CHMP1A-204ENST00000547687 C4AP0C0L4 1744 aa20.78■□□□□ 0.92
CHMP1A-204ENST00000547687 ABCC4O15439 1325 aa20.78■□□□□ 0.92
CHMP1A-204ENST00000547687 ZBTB7BO15156 539 aaPredicted RBP20.78■□□□□ 0.92
CHMP1A-204ENST00000547687 CRKLP46109 303 aaKnown RBP20.78■□□□□ 0.92
CHMP1A-204ENST00000547687 STK31Q9BXU1 1019 aa20.78■□□□□ 0.92
CHMP1A-204ENST00000547687 HDGFL1Q5TGJ6 251 aa20.77■□□□□ 0.91
CHMP1A-204ENST00000547687 G2E3Q7L622 706 aa20.77■□□□□ 0.91
CHMP1A-204ENST00000547687 RTCBQ9Y3I0 505 aaKnown RBP20.77■□□□□ 0.91
CHMP1A-204ENST00000547687 CACNA1FO60840 1977 aa20.76■□□□□ 0.91
CHMP1A-204ENST00000547687 PTPRCP08575 1304 aa20.76■□□□□ 0.91
CHMP1A-204ENST00000547687 CNTNAP4Q9C0A0 1308 aa20.76■□□□□ 0.91
CHMP1A-204ENST00000547687 CICQ96RK0 1608 aaPredicted RBP20.75■□□□□ 0.91
CHMP1A-204ENST00000547687 HOXB7P09629 217 aa20.75■□□□□ 0.91
CHMP1A-204ENST00000547687 HMGB2P26583 209 aaKnown RBP20.75■□□□□ 0.91
CHMP1A-204ENST00000547687 EIF2S2P20042 333 aaKnown RBP20.75■□□□□ 0.91
CHMP1A-204ENST00000547687 TRAPPC3LQ5T215 181 aa20.75■□□□□ 0.91
CHMP1A-204ENST00000547687 ZNF790Q6PG37 636 aa20.75■□□□□ 0.91
CHMP1A-204ENST00000547687 TTC5Q8N0Z6 440 aa20.75■□□□□ 0.91
CHMP1A-204ENST00000547687 ARHGEF1Q92888 912 aaKnown RBP20.75■□□□□ 0.91
CHMP1A-204ENST00000547687 SMC5Q8IY18 1101 aa20.74■□□□□ 0.91
CHMP1A-204ENST00000547687 HEG1Q9ULI3 1381 aa20.74■□□□□ 0.91
CHMP1A-204ENST00000547687 GIGYF1O75420 1035 aaPredicted RBP20.73■□□□□ 0.91
CHMP1A-204ENST00000547687 RC3H1Q5TC82 1133 aaKnown RBP20.73■□□□□ 0.91
CHMP1A-204ENST00000547687 INTS5Q6P9B9 1019 aaKnown RBP20.73■□□□□ 0.91
CHMP1A-204ENST00000547687 NLGN2Q8NFZ4 835 aa20.73■□□□□ 0.91
CHMP1A-204ENST00000547687 ZNF496Q96IT1 587 aaPredicted RBP20.73■□□□□ 0.91
CHMP1A-204ENST00000547687 RPS6KA4O75676 772 aa20.73■□□□□ 0.91
CHMP1A-204ENST00000547687 DDRGK1Q96HY6 314 aa20.73■□□□□ 0.91
CHMP1A-204ENST00000547687 PRAMEF22A3QJZ6 481 aa20.71■□□□□ 0.91
CHMP1A-204ENST00000547687 CYP19A1P11511 503 aaPredicted RBP20.71■□□□□ 0.91
CHMP1A-204ENST00000547687 FLIIQ13045 1269 aa20.71■□□□□ 0.91
CHMP1A-204ENST00000547687 SRP68Q9UHB9 627 aaKnown RBP20.71■□□□□ 0.91
CHMP1A-204ENST00000547687 RFC4P35249 363 aa20.7■□□□□ 0.9
CHMP1A-204ENST00000547687 INTS3Q68E01 1043 aaKnown RBP20.7■□□□□ 0.9
CHMP1A-204ENST00000547687 CCDC87Q9NVE4 849 aa20.7■□□□□ 0.9
CHMP1A-204ENST00000547687 ZBTB1Q9Y2K1 713 aa20.7■□□□□ 0.9
CHMP1A-204ENST00000547687 CHMP4AQ9BY43 222 aa20.69■□□□□ 0.9
CHMP1A-204ENST00000547687 CHPF2Q9P2E5 772 aa20.69■□□□□ 0.9
CHMP1A-204ENST00000547687 F6X3S4 739 aa20.68■□□□□ 0.9
CHMP1A-204ENST00000547687 PHAXQ9H814 394 aaKnown RBP20.68■□□□□ 0.9
CHMP1A-204ENST00000547687 FKBP5Q13451 457 aaPredicted RBP20.68■□□□□ 0.9
CHMP1A-204ENST00000547687 C1orf115Q9H7X2 142 aa20.68■□□□□ 0.9
CHMP1A-204ENST00000547687 MMP10P09238 476 aa20.67■□□□□ 0.9
CHMP1A-204ENST00000547687 GYS1P13807 737 aa20.67■□□□□ 0.9
CHMP1A-204ENST00000547687 NUCB1Q02818 461 aa20.66■□□□□ 0.9
CHMP1A-204ENST00000547687 VSIG10Q8N0Z9 540 aa20.66■□□□□ 0.9
CHMP1A-204ENST00000547687 WWC3Q9ULE0 1092 aa20.66■□□□□ 0.9
CHMP1A-204ENST00000547687 ANXA1P04083 346 aa20.66■□□□□ 0.9
CHMP1A-204ENST00000547687 ADRA2BP18089 450 aa20.66■□□□□ 0.9
CHMP1A-204ENST00000547687 SLC4A10Q6U841 1118 aa20.66■□□□□ 0.9
CHMP1A-204ENST00000547687 FMNL2Q96PY5 1086 aa20.66■□□□□ 0.9
CHMP1A-204ENST00000547687 DBF4Q9UBU7 674 aaPredicted RBP20.65■□□□□ 0.9
CHMP1A-204ENST00000547687 PIP4K2AP48426 406 aaPredicted RBP20.65■□□□□ 0.9
CHMP1A-204ENST00000547687 GCC1Q96CN9 775 aa20.65■□□□□ 0.9
CHMP1A-204ENST00000547687 ZNF330Q9Y3S2 320 aaPredicted RBP20.65■□□□□ 0.9
CHMP1A-204ENST00000547687 SEC24BO95487 1268 aa20.64■□□□□ 0.89
CHMP1A-204ENST00000547687 DCAF8L1A6NGE4 600 aa20.63■□□□□ 0.89
CHMP1A-204ENST00000547687 USP42Q9H9J4 1324 aaKnown RBP20.63■□□□□ 0.89
CHMP1A-204ENST00000547687 COL15A1P39059 1388 aa20.63■□□□□ 0.89
CHMP1A-204ENST00000547687 A1BGP04217 495 aa20.63■□□□□ 0.89
CHMP1A-204ENST00000547687 USPL1Q5W0Q7 1092 aa20.63■□□□□ 0.89
CHMP1A-204ENST00000547687 CHD1LQ86WJ1 897 aa20.63■□□□□ 0.89
CHMP1A-204ENST00000547687 SIRT2Q8IXJ6 389 aa20.63■□□□□ 0.89
CHMP1A-204ENST00000547687 USP16Q9Y5T5 823 aa20.63■□□□□ 0.89
CHMP1A-204ENST00000547687 STARD3NLO95772 234 aa20.62■□□□□ 0.89
CHMP1A-204ENST00000547687 SNRPA1P09661 255 aaKnown RBP20.62■□□□□ 0.89
CHMP1A-204ENST00000547687 PROSER3Q2NL68 480 aa20.62■□□□□ 0.89
CHMP1A-204ENST00000547687 N4BP2Q86UW6 1770 aaPredicted RBP20.62■□□□□ 0.89
CHMP1A-204ENST00000547687 CCT4P50991 539 aaKnown RBP20.61■□□□□ 0.89
CHMP1A-204ENST00000547687 GPR162Q16538 588 aa20.61■□□□□ 0.89
CHMP1A-204ENST00000547687 NLGN1Q8N2Q7 840 aa20.61■□□□□ 0.89
CHMP1A-204ENST00000547687 LNPKQ9C0E8 428 aa20.6■□□□□ 0.89
CHMP1A-204ENST00000547687 ZPR1O75312 459 aa20.6■□□□□ 0.89
CHMP1A-204ENST00000547687 PDIA6Q15084 440 aa20.6■□□□□ 0.89
CHMP1A-204ENST00000547687 ANKRD45Q5TZF3 282 aa20.6■□□□□ 0.89
CHMP1A-204ENST00000547687 DDX21Q9NR30 783 aaKnown RBP eCLIP20.59■□□□□ 0.89
CHMP1A-204ENST00000547687 CHD4Q14839 1912 aa20.58■□□□□ 0.89
CHMP1A-204ENST00000547687 MEIS3Q99687 375 aa20.58■□□□□ 0.89
CHMP1A-204ENST00000547687 CD2APQ9Y5K6 639 aa20.58■□□□□ 0.89
CHMP1A-204ENST00000547687 KIF13BQ9NQT8 1826 aa20.58■□□□□ 0.88
CHMP1A-204ENST00000547687 PI4KAP2A4QPH2 592 aa20.58■□□□□ 0.88
CHMP1A-204ENST00000547687 YBX3P16989 372 aaKnown RBP eCLIP20.58■□□□□ 0.885e-13■□□□□ 9
CHMP1A-204ENST00000547687 DDR1Q08345 913 aa20.58■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms