RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 GLTPD2A6NH11 291 aa9.11□□□□□ -0.95
LIMD1-204ENST00000474665 GNAI1P63096 354 aa9.11□□□□□ -0.95
LIMD1-204ENST00000474665 TRMT2AQ8IZ69 625 aaKnown RBP9.11□□□□□ -0.95
LIMD1-204ENST00000474665 TSPYL6Q8N831 410 aa9.11□□□□□ -0.95
LIMD1-204ENST00000474665 C8orf58Q8NAV2 365 aa9.11□□□□□ -0.95
LIMD1-204ENST00000474665 TNRC18O15417 2968 aaPredicted RBP9.11□□□□□ -0.95
LIMD1-204ENST00000474665 FANCIQ9NVI1 1328 aa9.1□□□□□ -0.95
LIMD1-204ENST00000474665 LAMB4A4D0S4 1761 aa9.1□□□□□ -0.95
LIMD1-204ENST00000474665 NBPF26B4DH59 902 aa9.1□□□□□ -0.95
LIMD1-204ENST00000474665 SNRPA1P09661 255 aaKnown RBP9.1□□□□□ -0.95
LIMD1-204ENST00000474665 CRKLP46109 303 aaKnown RBP9.1□□□□□ -0.95
LIMD1-204ENST00000474665 HNRNPUQ00839 825 aaKnown RBP eCLIP9.1□□□□□ -0.95
LIMD1-204ENST00000474665 CALD1Q05682 793 aaKnown RBP9.1□□□□□ -0.95
LIMD1-204ENST00000474665 SLFN5Q08AF3 891 aa9.1□□□□□ -0.95
LIMD1-204ENST00000474665 NBPF10Q6P3W6 841 aaKnown RBP9.1□□□□□ -0.95
LIMD1-204ENST00000474665 NBPF15Q8N660 670 aa9.1□□□□□ -0.95
LIMD1-204ENST00000474665 CNTNAP4Q9C0A0 1308 aa9.09□□□□□ -0.95
LIMD1-204ENST00000474665 A1BGP04217 495 aa9.09□□□□□ -0.95
LIMD1-204ENST00000474665 POTEIP0CG38 1075 aa9.09□□□□□ -0.95
LIMD1-204ENST00000474665 POTEJP0CG39 1038 aa9.09□□□□□ -0.95
LIMD1-204ENST00000474665 PIP4K2AP48426 406 aaPredicted RBP9.09□□□□□ -0.95
LIMD1-204ENST00000474665 RASSF7Q02833 373 aa9.09□□□□□ -0.95
LIMD1-204ENST00000474665 RC3H1Q5TC82 1133 aaKnown RBP9.09□□□□□ -0.95
LIMD1-204ENST00000474665 DUSP27Q5VZP5 1158 aa9.09□□□□□ -0.95
LIMD1-204ENST00000474665 CHADLQ6NUI6 762 aa9.09□□□□□ -0.95
LIMD1-204ENST00000474665 LRP10Q7Z4F1 713 aa9.09□□□□□ -0.95
LIMD1-204ENST00000474665 PIM2Q9P1W9 311 aa9.09□□□□□ -0.95
LIMD1-204ENST00000474665 ZBTB1Q9Y2K1 713 aa9.09□□□□□ -0.95
LIMD1-204ENST00000474665 PDE4DIPQ5VU43 2346 aa9.09□□□□□ -0.95
LIMD1-204ENST00000474665 ELL2O00472 640 aaPredicted RBP9.08□□□□□ -0.96
LIMD1-204ENST00000474665 GOLGA2Q08379 1002 aa9.08□□□□□ -0.96
LIMD1-204ENST00000474665 PDIA6Q15084 440 aa9.08□□□□□ -0.96
LIMD1-204ENST00000474665 PROSER3Q2NL68 480 aa9.08□□□□□ -0.96
LIMD1-204ENST00000474665 DALRD3Q5D0E6 543 aaKnown RBP9.08□□□□□ -0.96
LIMD1-204ENST00000474665 PRPF38BQ5VTL8 546 aaKnown RBP9.08□□□□□ -0.96
LIMD1-204ENST00000474665 MCOLN1Q9GZU1 580 aa9.08□□□□□ -0.96
LIMD1-204ENST00000474665 CCDC87Q9NVE4 849 aa9.08□□□□□ -0.96
LIMD1-204ENST00000474665 C4AP0C0L4 1744 aa9.08□□□□□ -0.96
LIMD1-204ENST00000474665 KIF13BQ9NQT8 1826 aa9.08□□□□□ -0.96
LIMD1-204ENST00000474665 SOS1Q07889 1333 aaPredicted RBP9.07□□□□□ -0.96
LIMD1-204ENST00000474665 ZBED9Q6R2W3 1325 aa9.07□□□□□ -0.96
LIMD1-204ENST00000474665 GNPATO15228 680 aa9.07□□□□□ -0.96
LIMD1-204ENST00000474665 RPS6KA4O75676 772 aa9.07□□□□□ -0.96
LIMD1-204ENST00000474665 SSFA2P28290 1259 aa9.07□□□□□ -0.96
LIMD1-204ENST00000474665 EIF5P55010 431 aaKnown RBP9.07□□□□□ -0.96
LIMD1-204ENST00000474665 EXOSC9Q06265 439 aaKnown RBP9.07□□□□□ -0.96
LIMD1-204ENST00000474665 TEX13AQ9BXU3 409 aaPredicted RBP9.07□□□□□ -0.96
LIMD1-204ENST00000474665 TSKSQ9UJT2 592 aa9.07□□□□□ -0.96
LIMD1-204ENST00000474665 CACNA1FO60840 1977 aa9.06□□□□□ -0.96
LIMD1-204ENST00000474665 E9PSI1 815 aa9.06□□□□□ -0.96
LIMD1-204ENST00000474665 VAMP4O75379 141 aa9.06□□□□□ -0.96
LIMD1-204ENST00000474665 STARD3NLO95772 234 aa9.06□□□□□ -0.96
LIMD1-204ENST00000474665 ANXA1P04083 346 aa9.06□□□□□ -0.96
LIMD1-204ENST00000474665 HOXB7P09629 217 aa9.06□□□□□ -0.96
LIMD1-204ENST00000474665 MAP2K1Q02750 393 aaPredicted RBP9.06□□□□□ -0.96
LIMD1-204ENST00000474665 NECTIN2Q92692 538 aa9.06□□□□□ -0.96
LIMD1-204ENST00000474665 SBF1O95248 1867 aa9.06□□□□□ -0.96
LIMD1-204ENST00000474665 TMEM88BA6NKF7 163 aa9.05□□□□□ -0.96
LIMD1-204ENST00000474665 EIF2S2P20042 333 aaKnown RBP9.05□□□□□ -0.96
LIMD1-204ENST00000474665 CANXP27824 592 aaKnown RBP9.05□□□□□ -0.96
LIMD1-204ENST00000474665 CHRNA5P30532 468 aa9.05□□□□□ -0.96
LIMD1-204ENST00000474665 ARHGEF1Q92888 912 aaKnown RBP9.05□□□□□ -0.96
LIMD1-204ENST00000474665 MYH16Q9H6N6 1097 aa9.05□□□□□ -0.96
LIMD1-204ENST00000474665 ARFGEF1Q9Y6D6 1849 aa9.05□□□□□ -0.96
LIMD1-204ENST00000474665 PASKQ96RG2 1323 aa9.05□□□□□ -0.96
LIMD1-204ENST00000474665 WDR33Q9C0J8 1336 aaKnown RBP9.05□□□□□ -0.96
LIMD1-204ENST00000474665 BRCA1P38398 1863 aaKnown RBP9.04□□□□□ -0.96
LIMD1-204ENST00000474665 TCERG1O14776 1098 aaKnown RBP9.04□□□□□ -0.96
LIMD1-204ENST00000474665 LMNB1P20700 586 aa9.04□□□□□ -0.96
LIMD1-204ENST00000474665 HMGB2P26583 209 aaKnown RBP9.04□□□□□ -0.96
LIMD1-204ENST00000474665 IL6STP40189 918 aaPredicted RBP9.04□□□□□ -0.96
LIMD1-204ENST00000474665 SOX10P56693 466 aa9.04□□□□□ -0.96
LIMD1-204ENST00000474665 DEFB115Q30KQ5 88 aa9.04□□□□□ -0.96
LIMD1-204ENST00000474665 TWISTNBQ3B726 338 aaPredicted RBP9.04□□□□□ -0.96
LIMD1-204ENST00000474665 BCL2L12Q9HB09 334 aa9.04□□□□□ -0.96
LIMD1-204ENST00000474665 CHPF2Q9P2E5 772 aa9.04□□□□□ -0.96
LIMD1-204ENST00000474665 SRP68Q9UHB9 627 aaKnown RBP9.04□□□□□ -0.96
LIMD1-204ENST00000474665 RTCBQ9Y3I0 505 aaKnown RBP9.04□□□□□ -0.96
LIMD1-204ENST00000474665 ZC3H4Q9UPT8 1303 aaKnown RBP9.04□□□□□ -0.96
LIMD1-204ENST00000474665 COL15A1P39059 1388 aa9.03□□□□□ -0.96
LIMD1-204ENST00000474665 ADRA2BP18089 450 aa9.03□□□□□ -0.96
LIMD1-204ENST00000474665 TRAPPC3LQ5T215 181 aa9.03□□□□□ -0.96
LIMD1-204ENST00000474665 HDGFL1Q5TGJ6 251 aa9.03□□□□□ -0.96
LIMD1-204ENST00000474665 TTLL7Q6ZT98 887 aa9.03□□□□□ -0.96
LIMD1-204ENST00000474665 NLGN1Q8N2Q7 840 aa9.03□□□□□ -0.96
LIMD1-204ENST00000474665 PARP3Q9Y6F1 533 aa9.03□□□□□ -0.96
LIMD1-204ENST00000474665 NUP98P52948 1817 aa9.03□□□□□ -0.96
LIMD1-204ENST00000474665 ERBB4Q15303 1308 aa9.03□□□□□ -0.96
LIMD1-204ENST00000474665 BCORQ6W2J9 1755 aa9.02□□□□□ -0.97
LIMD1-204ENST00000474665 RASSF10A6NK89 507 aa9.02□□□□□ -0.97
LIMD1-204ENST00000474665 CAMTA2O94983 1202 aa9.02□□□□□ -0.97
LIMD1-204ENST00000474665 MYL6BP14649 208 aa9.02□□□□□ -0.97
LIMD1-204ENST00000474665 DGKZQ13574 1117 aa9.02□□□□□ -0.97
LIMD1-204ENST00000474665 DPY19L2Q6NUT2 758 aa9.02□□□□□ -0.97
LIMD1-204ENST00000474665 G2E3Q7L622 706 aa9.02□□□□□ -0.97
LIMD1-204ENST00000474665 YTHDC1Q96MU7 727 aaKnown RBP9.02□□□□□ -0.97
LIMD1-204ENST00000474665 DDX21Q9NR30 783 aaKnown RBP eCLIP9.02□□□□□ -0.97
LIMD1-204ENST00000474665 TBC1D2BQ9UPU7 963 aa9.02□□□□□ -0.97
LIMD1-204ENST00000474665 USP42Q9H9J4 1324 aaKnown RBP9.02□□□□□ -0.97
LIMD1-204ENST00000474665 SCN7AQ01118 1682 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms