RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 ENTPD1P49961 510 aa19.16■□□□□ 0.66
CLN3-230ENST00000568076 ARFIP1P53367 373 aa19.16■□□□□ 0.66
CLN3-230ENST00000568076 BNIP3Q12983 259 aa19.16■□□□□ 0.66
CLN3-230ENST00000568076 ZNF770Q6IQ21 691 aaPredicted RBP19.16■□□□□ 0.66
CLN3-230ENST00000568076 DGLUCYQ7Z3D6 616 aa19.16■□□□□ 0.66
CLN3-230ENST00000568076 VN1R4Q7Z5H5 301 aa19.16■□□□□ 0.66
CLN3-230ENST00000568076 COMTD1Q86VU5 262 aa19.16■□□□□ 0.66
CLN3-230ENST00000568076 RBM45Q8IUH3 476 aaKnown RBP19.16■□□□□ 0.66
CLN3-230ENST00000568076 TBC1D19Q8N5T2 526 aa19.16■□□□□ 0.66
CLN3-230ENST00000568076 FLVCR1-AS1Q8TAF5 88 aa19.16■□□□□ 0.66
CLN3-230ENST00000568076 XAGE5Q8WWM1 108 aa19.16■□□□□ 0.66
CLN3-230ENST00000568076 GTPBP3Q969Y2 492 aaKnown RBP19.16■□□□□ 0.66
CLN3-230ENST00000568076 GDF15Q99988 308 aa19.16■□□□□ 0.66
CLN3-230ENST00000568076 P2RX2Q9UBL9 471 aa19.16■□□□□ 0.66
CLN3-230ENST00000568076 MDC1Q14676 2089 aaKnown RBP19.16■□□□□ 0.66
CLN3-230ENST00000568076 DNAH14Q0VDD8 3507 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 TRBV4-1A0A0J9YWV2 114 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 A6NCN8 305 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 BCAS1O75363 584 aaPredicted RBP19.15■□□□□ 0.66
CLN3-230ENST00000568076 PDE9AO76083 593 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 ZBTB11O95625 1053 aaPredicted RBP19.15■□□□□ 0.66
CLN3-230ENST00000568076 FADS2O95864 444 aaKnown RBP19.15■□□□□ 0.66
CLN3-230ENST00000568076 GASTP01350 101 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 ASGR2P07307 311 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 C8orf89P0DMQ9 161 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 SPCS2Q15005 226 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 TJAP1Q5JTD0 557 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 TCTN3Q6NUS6 607 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 AHSA2Q719I0 299 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 PRSS48Q7RTY5 328 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 ANKRD13BQ86YJ7 626 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 CCDC116Q8IYX3 515 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 AQP11Q8NBQ7 271 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 KCT2Q8NC54 265 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 RHOXF1Q8NHV9 184 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 RORBQ92753 470 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 PROX1Q92786 737 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 COL21A1Q96P44 957 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 CCNB1IP1Q9NPC3 277 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 ZSCAN32Q9NX65 697 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 RASGRP1O95267 797 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 F3P13726 295 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 GABRB1P18505 474 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 NDUFS1P28331 727 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 PRKAG1P54619 331 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 CTF1Q16619 201 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 SLC48A1Q6P1K1 146 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 TMEM64Q6YI46 380 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 CCDC81Q6ZN84 652 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 NRROSQ86YC3 692 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 LACC1Q8IV20 430 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 SMRP1Q8NCR6 262 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 IPCEF1Q8WWN9 437 aaPredicted RBP19.15■□□□□ 0.66
CLN3-230ENST00000568076 ZNF354BQ96LW1 612 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 YIPF4Q9BSR8 244 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 NMNAT1Q9HAN9 279 aaPredicted RBP19.15■□□□□ 0.66
CLN3-230ENST00000568076 ACOT13Q9NPJ3 140 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 ZNF226Q9NYT6 803 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 TRPC4Q9UBN4 977 aa19.15■□□□□ 0.66
CLN3-230ENST00000568076 GPC6Q9Y625 555 aaPredicted RBP19.15■□□□□ 0.66
CLN3-230ENST00000568076 ARRDC5A6NEK1 342 aa19.14■□□□□ 0.65
CLN3-230ENST00000568076 MRPS14O60783 128 aaKnown RBP19.14■□□□□ 0.65
CLN3-230ENST00000568076 FEN1P39748 380 aaKnown RBP19.14■□□□□ 0.65
CLN3-230ENST00000568076 FUT5Q11128 374 aa19.14■□□□□ 0.65
CLN3-230ENST00000568076 COLEC12Q5KU26 742 aa19.14■□□□□ 0.65
CLN3-230ENST00000568076 SYT6Q5T7P8 510 aaPredicted RBP19.14■□□□□ 0.65
CLN3-230ENST00000568076 TRIM73Q86UV7 250 aa19.14■□□□□ 0.65
CLN3-230ENST00000568076 P3H2Q8IVL5 708 aa19.14■□□□□ 0.65
CLN3-230ENST00000568076 PARP8Q8N3A8 854 aa19.14■□□□□ 0.65
CLN3-230ENST00000568076 VANGL1Q8TAA9 524 aaPredicted RBP19.14■□□□□ 0.65
CLN3-230ENST00000568076 DTNBP1Q96EV8 351 aa19.14■□□□□ 0.65
CLN3-230ENST00000568076 ZNF607Q96SK3 696 aa19.14■□□□□ 0.65
CLN3-230ENST00000568076 MAPKAP1Q9BPZ7 522 aa19.14■□□□□ 0.65
CLN3-230ENST00000568076 SRMSQ9H3Y6 488 aa19.14■□□□□ 0.65
CLN3-230ENST00000568076 ZNF556Q9HAH1 456 aa19.14■□□□□ 0.65
CLN3-230ENST00000568076 KCNK12Q9HB15 430 aa19.14■□□□□ 0.65
CLN3-230ENST00000568076 SLC6A14Q9UN76 642 aa19.14■□□□□ 0.65
CLN3-230ENST00000568076 CCDC88CQ9P219 2028 aa19.14■□□□□ 0.65
CLN3-230ENST00000568076 GOLGA4Q13439 2230 aaKnown RBP19.14■□□□□ 0.65
CLN3-230ENST00000568076 TCRBV21S2A2A0A5A6 115 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 PROM1O43490 865 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 GUCY1B2O75343 617 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 GABRG2P18507 467 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 TSFMP43897 325 aaKnown RBP19.13■□□□□ 0.65
CLN3-230ENST00000568076 IDH2P48735 452 aaKnown RBP19.13■□□□□ 0.65
CLN3-230ENST00000568076 SEC23BQ15437 767 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 ALG11Q2TAA5 492 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 KLHL17Q6TDP4 642 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 NLGN4XQ8N0W4 816 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 SRFBP1Q8NEF9 429 aaKnown RBP19.13■□□□□ 0.65
CLN3-230ENST00000568076 UTP15Q8TED0 518 aaKnown RBP19.13■□□□□ 0.65
CLN3-230ENST00000568076 YIPF6Q96EC8 236 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 TWSG1Q9GZX9 223 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 TRPV5Q9NQA5 729 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 SEC14L3Q9UDX4 400 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 CD207Q9UJ71 328 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 SHISA7A6NL88 538 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 M0R129 80 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 ZW10O43264 779 aa19.13■□□□□ 0.65
CLN3-230ENST00000568076 BCL10O95999 233 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms