RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 SLC22A18Q96BI1 424 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 HRASLS2Q9NWW9 162 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 CLEC4EQ9ULY5 219 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 CLCA3PQ9Y6N3 262 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 OR6C70A6NIJ9 312 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 AKAP8O43823 692 aaKnown RBP11.18□□□□□ -0.62
SYNPO-204ENST00000519664 PCDHGA12O60330 932 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 B3GALT4O96024 378 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 HMGN1P05114 100 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 MMP2P08253 660 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 CTSAP10619 480 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 C7P10643 843 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 PSMA3P25788 255 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 AKT2P31751 481 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 CDKN2CP42773 168 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 AKIRIN2Q53H80 203 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 PRRT3Q5FWE3 981 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 BICRALQ6AI39 1079 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 TSPYL5Q86VY4 417 aaPredicted RBP11.18□□□□□ -0.62
SYNPO-204ENST00000519664 LNX2Q8N448 690 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 OR5D16Q8NGK9 328 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 OR5M3Q8NGP4 307 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 NDNFQ8TB73 568 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 OR5P2Q8WZ92 322 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 RPL3LQ92901 407 aaKnown RBP11.18□□□□□ -0.62
SYNPO-204ENST00000519664 CD180Q99467 661 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 TUBA1CQ9BQE3 449 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 CDADC1Q9BWV3 514 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 RAB11FIP5Q9BXF6 653 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 HDHD5Q9BXW7 423 aa11.18□□□□□ -0.62
SYNPO-204ENST00000519664 A0A1B0GVT2 93 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 RHPN2P1A8MT19 583 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 SOX30O94993 753 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 HPRP00739 348 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 GSTM2P28161 218 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 CLCN7P51798 805 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 FADDQ13158 208 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 NDUFA9Q16795 377 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 WSCD2Q2TBF2 565 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 SYCE2Q6PIF2 218 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 FIGNL1Q6PIW4 674 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 ANKRD13BQ86YJ7 626 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 ZNF480Q8WV37 535 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 GATAD2BQ8WXI9 593 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 TSACCQ96A04 125 aaPredicted RBP11.17□□□□□ -0.62
SYNPO-204ENST00000519664 BTBD1Q9H0C5 482 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 HEBP1Q9NRV9 189 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 SLC16A5O15375 505 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 RETP07949 1114 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 SBK3P0C264 359 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 ADRB3P13945 408 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 IL1RNP18510 177 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 GPR4P46093 362 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 DCDC1P59894 354 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 GFOD2Q3B7J2 385 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 SAMD14Q8IZD0 417 aaPredicted RBP11.17□□□□□ -0.62
SYNPO-204ENST00000519664 TMEM151AQ8N4L1 468 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 ASB11Q8WXH4 323 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 SECISBP2Q96T21 854 aaKnown RBP11.17□□□□□ -0.62
SYNPO-204ENST00000519664 MND1Q9BWT6 205 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 LTB4R2Q9NPC1 389 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 IFT52Q9Y366 437 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 MED31Q9Y3C7 131 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 STRCQ7RTU9 1775 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 RPS3P23396 243 aaKnown RBP eCLIP11.17□□□□□ -0.62
SYNPO-204ENST00000519664 ACVR2AP27037 513 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 PSMB5P28074 263 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 LIPIQ6XZB0 460 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 LINGO2Q7L985 606 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 TMC8Q8IU68 726 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 CHST4Q8NCG5 386 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 NUP43Q8NFH3 380 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 TOR1AIP2Q8NFQ8 470 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 OR4K5Q8NGD3 323 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 OR52E4Q8NGH9 312 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 NTMT1Q9BV86 223 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 IL21RQ9HBE5 538 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 NLGN3Q9NZ94 848 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 PCDHGB5Q9Y5G0 923 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 PCDHA9Q9Y5H5 950 aa11.17□□□□□ -0.62
SYNPO-204ENST00000519664 SPAG17Q6Q759 2223 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 ARPC4-TTLL3A0A0A6YYG9 625 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 SCRN3Q0VDG4 424 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 MAP4K2Q12851 820 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 IRF5Q13568 498 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 ZNF267Q14586 743 aaPredicted RBP11.16□□□□□ -0.62
SYNPO-204ENST00000519664 GTF2IRD2BQ6EKJ0 949 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 SLC27A4Q6P1M0 643 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 ZNF517Q6ZMY9 492 aaPredicted RBP11.16□□□□□ -0.62
SYNPO-204ENST00000519664 GTF2IRD2Q86UP8 949 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 NLGN4XQ8N0W4 816 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.16□□□□□ -0.62
SYNPO-204ENST00000519664 UBE2FQ969M7 185 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 MGAT4BQ9UQ53 548 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 HIDE1A8MVS5 230 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 ARNTLO00327 626 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 GSTM3P21266 225 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 CD72P21854 359 aa11.16□□□□□ -0.62
SYNPO-204ENST00000519664 NUP62P37198 522 aaPredicted RBP11.16□□□□□ -0.62
SYNPO-204ENST00000519664 MAGEA12P43365 314 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms