RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 DCAF8L2P0C7V8 631 aa20.7■□□□□ 0.9
SYNPO-204ENST00000519664 NISCHQ9Y2I1 1504 aa20.66■□□□□ 0.9
SYNPO-204ENST00000519664 SUPT5HO00267 1087 aaKnown RBP20.05■□□□□ 0.8
SYNPO-204ENST00000519664 SHROOM4Q9ULL8 1493 aa19.89■□□□□ 0.77
SYNPO-204ENST00000519664 EHMT2Q96KQ7 1210 aa19.31■□□□□ 0.68
SYNPO-204ENST00000519664 FAM9AQ8IZU1 332 aaPredicted RBP18.87■□□□□ 0.61
SYNPO-204ENST00000519664 PCGF6Q9BYE7 350 aa18.81■□□□□ 0.6
SYNPO-204ENST00000519664 TTBK1Q5TCY1 1321 aaPredicted RBP18.61■□□□□ 0.57
SYNPO-204ENST00000519664 PELP1Q8IZL8 1130 aaKnown RBP18.47■□□□□ 0.55
SYNPO-204ENST00000519664 TRIM41Q8WV44 630 aa18.4■□□□□ 0.54
SYNPO-204ENST00000519664 RANGAP1P46060 587 aaPredicted RBP18.3■□□□□ 0.52
SYNPO-204ENST00000519664 PPARGC1BQ86YN6 1023 aaKnown RBP18.26■□□□□ 0.51
SYNPO-204ENST00000519664 LOC105371045A0A1W2PR82 267 aa18.23■□□□□ 0.51
SYNPO-204ENST00000519664 MYT1Q01538 1121 aa18.2■□□□□ 0.5
SYNPO-204ENST00000519664 APLP2Q06481 763 aa18.2■□□□□ 0.5
SYNPO-204ENST00000519664 CHIC1Q5VXU3 224 aa18.18■□□□□ 0.5
SYNPO-204ENST00000519664 CCER1Q8TC90 406 aaPredicted RBP18.07■□□□□ 0.48
SYNPO-204ENST00000519664 UBTFP17480 764 aaKnown RBP18.02■□□□□ 0.48
SYNPO-204ENST00000519664 HRCP23327 699 aa17.94■□□□□ 0.46
SYNPO-204ENST00000519664 TRIM26Q12899 539 aaPredicted RBP17.88■□□□□ 0.45
SYNPO-204ENST00000519664 ZEB1P37275 1124 aaPredicted RBP17.87■□□□□ 0.45
SYNPO-204ENST00000519664 ATP1B4Q9UN42 357 aaPredicted RBP17.82■□□□□ 0.44
SYNPO-204ENST00000519664 YTHDC1Q96MU7 727 aaKnown RBP17.73■□□□□ 0.43
SYNPO-204ENST00000519664 CENPBP07199 599 aaPredicted RBP17.66■□□□□ 0.42
SYNPO-204ENST00000519664 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.57■□□□□ 0.4
SYNPO-204ENST00000519664 HNRNPUL2Q1KMD3 747 aaKnown RBP17.55■□□□□ 0.4
SYNPO-204ENST00000519664 ITGAEP38570 1179 aa17.54■□□□□ 0.4
SYNPO-204ENST00000519664 ABCC9O60706 1549 aa17.51■□□□□ 0.39
SYNPO-204ENST00000519664 PABPN1Q86U42 306 aaKnown RBP eCLIP17.47■□□□□ 0.39
SYNPO-204ENST00000519664 DIEXFQ68CQ4 756 aaKnown RBP17.21■□□□□ 0.35
SYNPO-204ENST00000519664 ZCCHC6Q5VYS8 1495 aaKnown RBP17.16■□□□□ 0.34
SYNPO-204ENST00000519664 CNGB1Q14028 1251 aaPredicted RBP17.13■□□□□ 0.33
SYNPO-204ENST00000519664 NEFLP07196 543 aa17.09■□□□□ 0.33
SYNPO-204ENST00000519664 MYO15BQ96JP2 1530 aa17.04■□□□□ 0.32
SYNPO-204ENST00000519664 POLR3GLQ9BT43 218 aa17.04■□□□□ 0.32
SYNPO-204ENST00000519664 ERICH6Q7L0X2 663 aa17.01■□□□□ 0.31
SYNPO-204ENST00000519664 FAM50AQ14320 339 aaKnown RBP16.99■□□□□ 0.31
SYNPO-204ENST00000519664 CSRNP3Q8WYN3 585 aa16.99■□□□□ 0.31
SYNPO-204ENST00000519664 SCRIBQ14160 1630 aa16.97■□□□□ 0.31
SYNPO-204ENST00000519664 NEUROD1Q13562 356 aa16.95■□□□□ 0.3
SYNPO-204ENST00000519664 GTF3C3Q9Y5Q9 886 aa16.94■□□□□ 0.3
SYNPO-204ENST00000519664 P3H3Q8IVL6 736 aa16.89■□□□□ 0.29
SYNPO-204ENST00000519664 ZNF316A6NFI3 1004 aaPredicted RBP16.82■□□□□ 0.28
SYNPO-204ENST00000519664 DCAF1Q9Y4B6 1507 aa16.79■□□□□ 0.28
SYNPO-204ENST00000519664 BCANQ96GW7 911 aa16.77■□□□□ 0.28
SYNPO-204ENST00000519664 ARID3CA6NKF2 412 aa16.76■□□□□ 0.27
SYNPO-204ENST00000519664 TRIM52Q96A61 297 aa16.75■□□□□ 0.27
SYNPO-204ENST00000519664 MYT1LQ9UL68 1186 aa16.75■□□□□ 0.27
SYNPO-204ENST00000519664 ACIN1Q9UKV3 1341 aaKnown RBP16.72■□□□□ 0.27
SYNPO-204ENST00000519664 RSF1Q96T23 1441 aaPredicted RBP16.7■□□□□ 0.26
SYNPO-204ENST00000519664 CCDC180Q9P1Z9 1646 aa16.66■□□□□ 0.26
SYNPO-204ENST00000519664 ZNF326Q5BKZ1 582 aaKnown RBP16.63■□□□□ 0.25
SYNPO-204ENST00000519664 FBLN2P98095 1184 aa16.61■□□□□ 0.25
SYNPO-204ENST00000519664 SCAF1Q9H7N4 1312 aaKnown RBP16.56■□□□□ 0.24
SYNPO-204ENST00000519664 ANP32CO43423 234 aa16.52■□□□□ 0.24
SYNPO-204ENST00000519664 MIER1Q8N108 512 aa16.47■□□□□ 0.23
SYNPO-204ENST00000519664 CECR2Q9BXF3 1484 aa16.47■□□□□ 0.23
SYNPO-204ENST00000519664 DDX10Q13206 875 aaKnown RBP16.46■□□□□ 0.23
SYNPO-204ENST00000519664 SLC4A1APQ9BWU0 796 aaKnown RBP16.46■□□□□ 0.23
SYNPO-204ENST00000519664 HIRIP3Q9BW71 556 aaPredicted RBP16.46■□□□□ 0.22
SYNPO-204ENST00000519664 ZNF777Q9ULD5 760 aaPredicted RBP16.42■□□□□ 0.22
SYNPO-204ENST00000519664 CEP162Q5TB80 1403 aa16.39■□□□□ 0.21
SYNPO-204ENST00000519664 CHIC2Q9UKJ5 165 aa16.39■□□□□ 0.21
SYNPO-204ENST00000519664 CLIP1P30622 1438 aa16.39■□□□□ 0.21
SYNPO-204ENST00000519664 DAXXQ9UER7 740 aaPredicted RBP16.33■□□□□ 0.2
SYNPO-204ENST00000519664 FKBP8Q14318 412 aa16.31■□□□□ 0.2
SYNPO-204ENST00000519664 WRNQ14191 1432 aaPredicted RBP eCLIP16.27■□□□□ 0.19
SYNPO-204ENST00000519664 TONSLQ96HA7 1378 aa16.26■□□□□ 0.19
SYNPO-204ENST00000519664 SOGA1O94964 1423 aa16.26■□□□□ 0.19
SYNPO-204ENST00000519664 RB1CC1Q8TDY2 1594 aa16.24■□□□□ 0.19
SYNPO-204ENST00000519664 HNRNPUQ00839 825 aaKnown RBP eCLIP16.24■□□□□ 0.19
SYNPO-204ENST00000519664 CLSPNQ9HAW4 1339 aa16.23■□□□□ 0.19
SYNPO-204ENST00000519664 FAM9BQ8IZU0 186 aa16.22■□□□□ 0.19
SYNPO-204ENST00000519664 CDK11AQ9UQ88 783 aaPredicted RBP16.22■□□□□ 0.19
SYNPO-204ENST00000519664 GOLGA3Q08378 1498 aa16.2■□□□□ 0.18
SYNPO-204ENST00000519664 TNIKQ9UKE5 1360 aa16.2■□□□□ 0.18
SYNPO-204ENST00000519664 MROH2BQ7Z745 1585 aa16.18■□□□□ 0.18
SYNPO-204ENST00000519664 SALL2Q9Y467 1007 aaPredicted RBP16.18■□□□□ 0.18
SYNPO-204ENST00000519664 RRP7BPQ9NSQ0 103 aa16.17■□□□□ 0.18
SYNPO-204ENST00000519664 SENP3-EIF4A1A0A087X0R7 540 aa16.16■□□□□ 0.18
SYNPO-204ENST00000519664 IRX6P78412 446 aaPredicted RBP16.15■□□□□ 0.18
SYNPO-204ENST00000519664 NACADO15069 1562 aa16.15■□□□□ 0.18
SYNPO-204ENST00000519664 MTUS2Q5JR59 1369 aa16.14■□□□□ 0.17
SYNPO-204ENST00000519664 SIN3AQ96ST3 1273 aa16.13■□□□□ 0.17
SYNPO-204ENST00000519664 EEA1Q15075 1411 aa16.12■□□□□ 0.17
SYNPO-204ENST00000519664 RTL5Q5HYW3 569 aaPredicted RBP16.11■□□□□ 0.17
SYNPO-204ENST00000519664 ABCC8Q09428 1581 aa16.11■□□□□ 0.17
SYNPO-204ENST00000519664 CCDC88BA6NC98 1476 aa16.09■□□□□ 0.17
SYNPO-204ENST00000519664 BAZ1BQ9UIG0 1483 aaKnown RBP16.09■□□□□ 0.17
SYNPO-204ENST00000519664 KDM2AQ9Y2K7 1162 aa16.08■□□□□ 0.17
SYNPO-204ENST00000519664 BCL11AQ9H165 835 aa16.08■□□□□ 0.16
SYNPO-204ENST00000519664 BAZ1AQ9NRL2 1556 aaPredicted RBP16.07■□□□□ 0.16
SYNPO-204ENST00000519664 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.06■□□□□ 0.16
SYNPO-204ENST00000519664 CEP164Q9UPV0 1460 aa16.04■□□□□ 0.16
SYNPO-204ENST00000519664 KANK4Q5T7N3 995 aaPredicted RBP16.03■□□□□ 0.16
SYNPO-204ENST00000519664 MRS2Q9HD23 443 aa16.02■□□□□ 0.16
SYNPO-204ENST00000519664 NPM2Q86SE8 214 aaKnown RBP16.02■□□□□ 0.15
SYNPO-204ENST00000519664 KIF27Q86VH2 1401 aa15.99■□□□□ 0.15
SYNPO-204ENST00000519664 ANP32EQ9BTT0 268 aa15.97■□□□□ 0.15
SYNPO-204ENST00000519664 CHGAP10645 457 aaKnown RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms