RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 ZNF428Q96B54 188 aa16.34■□□□□ 0.21
VMP1-202ENST00000585847 PDGFDQ9GZP0 370 aaPredicted RBP16.34■□□□□ 0.21
VMP1-202ENST00000585847 CCNL1Q9UK58 526 aaPredicted RBP16.34■□□□□ 0.21
VMP1-202ENST00000585847 ATF5Q9Y2D1 282 aaPredicted RBP16.34■□□□□ 0.21
VMP1-202ENST00000585847 LAMB4A4D0S4 1761 aa16.33■□□□□ 0.21
VMP1-202ENST00000585847 TUBGCP6Q96RT7 1819 aa16.33■□□□□ 0.21
VMP1-202ENST00000585847 ATP6V1AP38606 617 aa16.33■□□□□ 0.2
VMP1-202ENST00000585847 SLC15A2Q16348 729 aa16.33■□□□□ 0.2
VMP1-202ENST00000585847 TTC5Q8N0Z6 440 aa16.33■□□□□ 0.2
VMP1-202ENST00000585847 LINC00116Q8NCU8 138 aa16.33■□□□□ 0.2
VMP1-202ENST00000585847 FMNL2Q96PY5 1086 aa16.33■□□□□ 0.2
VMP1-202ENST00000585847 FANCIQ9NVI1 1328 aa16.33■□□□□ 0.2
VMP1-202ENST00000585847 C4BP0C0L5 1744 aa16.33■□□□□ 0.2
VMP1-202ENST00000585847 GIGYF1O75420 1035 aaPredicted RBP16.32■□□□□ 0.2
VMP1-202ENST00000585847 RNF123Q5XPI4 1314 aa16.32■□□□□ 0.2
VMP1-202ENST00000585847 VSIG10Q8N0Z9 540 aa16.32■□□□□ 0.2
VMP1-202ENST00000585847 USP16Q9Y5T5 823 aa16.31■□□□□ 0.2
VMP1-202ENST00000585847 UBR3Q6ZT12 1888 aa16.31■□□□□ 0.2
VMP1-202ENST00000585847 CYP19A1P11511 503 aaPredicted RBP16.3■□□□□ 0.2
VMP1-202ENST00000585847 PTGER2P43116 358 aa16.3■□□□□ 0.2
VMP1-202ENST00000585847 ZNF827Q17R98 1081 aa16.3■□□□□ 0.2
VMP1-202ENST00000585847 TSPYL6Q8N831 410 aa16.3■□□□□ 0.2
VMP1-202ENST00000585847 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.3■□□□□ 0.2
VMP1-202ENST00000585847 C8orf58Q8NAV2 365 aa16.3■□□□□ 0.2
VMP1-202ENST00000585847 AKT1S1Q96B36 256 aa16.3■□□□□ 0.2
VMP1-202ENST00000585847 RCAN3Q9UKA8 241 aa16.3■□□□□ 0.2
VMP1-202ENST00000585847 SOS1Q07889 1333 aaPredicted RBP16.29■□□□□ 0.2
VMP1-202ENST00000585847 SNRPA1P09661 255 aaKnown RBP16.29■□□□□ 0.2
VMP1-202ENST00000585847 AMIGO3Q86WK7 504 aa16.29■□□□□ 0.2
VMP1-202ENST00000585847 FHDC1Q9C0D6 1143 aaPredicted RBP16.29■□□□□ 0.2
VMP1-202ENST00000585847 MTFR1LQ9H019 292 aa16.29■□□□□ 0.2
VMP1-202ENST00000585847 INTS5Q6P9B9 1019 aaKnown RBP16.28■□□□□ 0.2
VMP1-202ENST00000585847 CHMP4AQ9BY43 222 aa16.28■□□□□ 0.2
VMP1-202ENST00000585847 QSER1Q2KHR3 1735 aa16.28■□□□□ 0.2
VMP1-202ENST00000585847 CNTNAP4Q9C0A0 1308 aa16.27■□□□□ 0.2
VMP1-202ENST00000585847 EXOSC9Q06265 439 aaKnown RBP16.27■□□□□ 0.2
VMP1-202ENST00000585847 SMIM5Q71RC9 77 aa16.27■□□□□ 0.2
VMP1-202ENST00000585847 SYT17Q9BSW7 474 aa16.27■□□□□ 0.2
VMP1-202ENST00000585847 ELL2O00472 640 aaPredicted RBP16.26■□□□□ 0.19
VMP1-202ENST00000585847 CRKLP46109 303 aaKnown RBP16.26■□□□□ 0.19
VMP1-202ENST00000585847 RC3H1Q5TC82 1133 aaKnown RBP16.26■□□□□ 0.19
VMP1-202ENST00000585847 NBPF26B4DH59 902 aa16.25■□□□□ 0.19
VMP1-202ENST00000585847 A1BGP04217 495 aa16.25■□□□□ 0.19
VMP1-202ENST00000585847 NBPF10Q6P3W6 841 aaKnown RBP16.25■□□□□ 0.19
VMP1-202ENST00000585847 NBPF15Q8N660 670 aa16.25■□□□□ 0.19
VMP1-202ENST00000585847 TEX13AQ9BXU3 409 aaPredicted RBP16.25■□□□□ 0.19
VMP1-202ENST00000585847 ZBTB1Q9Y2K1 713 aa16.25■□□□□ 0.19
VMP1-202ENST00000585847 VAMP4O75379 141 aa16.24■□□□□ 0.19
VMP1-202ENST00000585847 HOXB7P09629 217 aa16.24■□□□□ 0.19
VMP1-202ENST00000585847 PIP4K2AP48426 406 aaPredicted RBP16.24■□□□□ 0.19
VMP1-202ENST00000585847 PDIA6Q15084 440 aa16.24■□□□□ 0.19
VMP1-202ENST00000585847 LRP10Q7Z4F1 713 aa16.24■□□□□ 0.19
VMP1-202ENST00000585847 ZNF784Q8NCA9 323 aaPredicted RBP16.24■□□□□ 0.19
VMP1-202ENST00000585847 ARXQ96QS3 562 aa16.24■□□□□ 0.19
VMP1-202ENST00000585847 TWISTNBQ3B726 338 aaPredicted RBP16.23■□□□□ 0.19
VMP1-202ENST00000585847 CCDC87Q9NVE4 849 aa16.23■□□□□ 0.19
VMP1-202ENST00000585847 C4AP0C0L4 1744 aa16.22■□□□□ 0.19
VMP1-202ENST00000585847 CHD4Q14839 1912 aa16.22■□□□□ 0.19
VMP1-202ENST00000585847 STARD3NLO95772 234 aa16.22■□□□□ 0.19
VMP1-202ENST00000585847 EIF2S2P20042 333 aaKnown RBP16.22■□□□□ 0.19
VMP1-202ENST00000585847 SUPT16HQ9Y5B9 1047 aaKnown RBP16.22■□□□□ 0.19
VMP1-202ENST00000585847 GTF3C3Q9Y5Q9 886 aa16.22■□□□□ 0.19
VMP1-202ENST00000585847 PNPLA7Q6ZV29 1317 aa16.21■□□□□ 0.19
VMP1-202ENST00000585847 RPS6KA4O75676 772 aa16.21■□□□□ 0.19
VMP1-202ENST00000585847 RRP1P56182 461 aaKnown RBP16.21■□□□□ 0.19
VMP1-202ENST00000585847 PROSER3Q2NL68 480 aa16.21■□□□□ 0.19
VMP1-202ENST00000585847 NECTIN2Q92692 538 aa16.21■□□□□ 0.19
VMP1-202ENST00000585847 GNPATO15228 680 aa16.2■□□□□ 0.18
VMP1-202ENST00000585847 ANXA1P04083 346 aa16.2■□□□□ 0.18
VMP1-202ENST00000585847 MS4A1P11836 297 aa16.2■□□□□ 0.18
VMP1-202ENST00000585847 EIF5P55010 431 aaKnown RBP16.2■□□□□ 0.18
VMP1-202ENST00000585847 ALDH1L2Q3SY69 923 aa16.2■□□□□ 0.18
VMP1-202ENST00000585847 KLHL34Q8N239 644 aa16.2■□□□□ 0.18
VMP1-202ENST00000585847 AK7Q96M32 723 aa16.2■□□□□ 0.18
VMP1-202ENST00000585847 SGIP1Q9BQI5 828 aa16.2■□□□□ 0.18
VMP1-202ENST00000585847 CACNA1FO60840 1977 aa16.19■□□□□ 0.18
VMP1-202ENST00000585847 CANXP27824 592 aaKnown RBP16.19■□□□□ 0.18
VMP1-202ENST00000585847 GPR162Q16538 588 aa16.19■□□□□ 0.18
VMP1-202ENST00000585847 HDGFL1Q5TGJ6 251 aa16.19■□□□□ 0.18
VMP1-202ENST00000585847 ERBB4Q15303 1308 aa16.19■□□□□ 0.18
VMP1-202ENST00000585847 TCERG1O14776 1098 aaKnown RBP16.18■□□□□ 0.18
VMP1-202ENST00000585847 POLD1P28340 1107 aa16.18■□□□□ 0.18
VMP1-202ENST00000585847 IL6STP40189 918 aaPredicted RBP16.18■□□□□ 0.18
VMP1-202ENST00000585847 AAMPQ13685 434 aa16.18■□□□□ 0.18
VMP1-202ENST00000585847 COL23A1Q86Y22 540 aaPredicted RBP16.18■□□□□ 0.18
VMP1-202ENST00000585847 CHPF2Q9P2E5 772 aa16.18■□□□□ 0.18
VMP1-202ENST00000585847 UTRNP46939 3433 aa16.18■□□□□ 0.18
VMP1-202ENST00000585847 KIF16BQ96L93 1317 aa16.18■□□□□ 0.18
VMP1-202ENST00000585847 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.17■□□□□ 0.18
VMP1-202ENST00000585847 SSFA2P28290 1259 aa16.17■□□□□ 0.18
VMP1-202ENST00000585847 BRPF1P55201 1214 aaPredicted RBP16.17■□□□□ 0.18
VMP1-202ENST00000585847 ARHGEF1Q92888 912 aaKnown RBP16.17■□□□□ 0.18
VMP1-202ENST00000585847 DDX21Q9NR30 783 aaKnown RBP eCLIP16.17■□□□□ 0.18
VMP1-202ENST00000585847 RTCBQ9Y3I0 505 aaKnown RBP16.17■□□□□ 0.18
VMP1-202ENST00000585847 COL15A1P39059 1388 aa16.16■□□□□ 0.18
VMP1-202ENST00000585847 BCORQ6W2J9 1755 aa16.16■□□□□ 0.18
VMP1-202ENST00000585847 PHF14O94880 888 aa16.16■□□□□ 0.18
VMP1-202ENST00000585847 HMGB2P26583 209 aaKnown RBP16.16■□□□□ 0.18
VMP1-202ENST00000585847 PELP1Q8IZL8 1130 aaKnown RBP16.16■□□□□ 0.18
VMP1-202ENST00000585847 TFCP2L1Q9NZI6 479 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms