RNA–Protein interactions for RNA: ENST00000573989.1

TRAPPC1-206, Transcript of trafficking protein particle complex 1, humanhuman

TSL 2

Gene TRAPPC1, Length 436 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC1-206ENST00000573989 NPM2Q86SE8 214 aaKnown RBP16.63■□□□□ 0.25
TRAPPC1-206ENST00000573989 IFT57Q9NWB7 429 aa16.63■□□□□ 0.25
TRAPPC1-206ENST00000573989 CHL1O00533 1208 aa16.62■□□□□ 0.25
TRAPPC1-206ENST00000573989 EIF4A1P60842 406 aaKnown RBP16.62■□□□□ 0.25
TRAPPC1-206ENST00000573989 WWC1Q8IX03 1113 aa16.62■□□□□ 0.25
TRAPPC1-206ENST00000573989 MTFR1LQ9H019 292 aa16.62■□□□□ 0.25
TRAPPC1-206ENST00000573989 SPON1Q9HCB6 807 aa16.62■□□□□ 0.25
TRAPPC1-206ENST00000573989 LAMB4A4D0S4 1761 aa16.61■□□□□ 0.25
TRAPPC1-206ENST00000573989 COL23A1Q86Y22 540 aaPredicted RBP16.61■□□□□ 0.25
TRAPPC1-206ENST00000573989 SALL2Q9Y467 1007 aaPredicted RBP16.61■□□□□ 0.25
TRAPPC1-206ENST00000573989 RFC4P35249 363 aa16.6■□□□□ 0.25
TRAPPC1-206ENST00000573989 INTS5Q6P9B9 1019 aaKnown RBP16.6■□□□□ 0.25
TRAPPC1-206ENST00000573989 GIGYF1O75420 1035 aaPredicted RBP16.59■□□□□ 0.25
TRAPPC1-206ENST00000573989 ZBTB7AO95365 584 aa16.59■□□□□ 0.25
TRAPPC1-206ENST00000573989 WDR63Q8IWG1 891 aa16.59■□□□□ 0.25
TRAPPC1-206ENST00000573989 PDGFDQ9GZP0 370 aaPredicted RBP16.59■□□□□ 0.25
TRAPPC1-206ENST00000573989 USP16Q9Y5T5 823 aa16.59■□□□□ 0.25
TRAPPC1-206ENST00000573989 IL16Q14005 1332 aa16.59■□□□□ 0.25
TRAPPC1-206ENST00000573989 LRP5O75197 1615 aa16.59■□□□□ 0.25
TRAPPC1-206ENST00000573989 A0A087WZG4 1122 aa16.58■□□□□ 0.24
TRAPPC1-206ENST00000573989 SENP3-EIF4A1A0A087X0R7 540 aa16.58■□□□□ 0.24
TRAPPC1-206ENST00000573989 ZNF853P0CG23 659 aa16.58■□□□□ 0.24
TRAPPC1-206ENST00000573989 CANXP27824 592 aaKnown RBP16.58■□□□□ 0.24
TRAPPC1-206ENST00000573989 MBIPQ9NS73 344 aa16.58■□□□□ 0.24
TRAPPC1-206ENST00000573989 ZBTB1Q9Y2K1 713 aa16.58■□□□□ 0.24
TRAPPC1-206ENST00000573989 SOS1Q07889 1333 aaPredicted RBP16.57■□□□□ 0.24
TRAPPC1-206ENST00000573989 POLD1P28340 1107 aa16.57■□□□□ 0.24
TRAPPC1-206ENST00000573989 IL6STP40189 918 aaPredicted RBP16.57■□□□□ 0.24
TRAPPC1-206ENST00000573989 ARHGEF1Q92888 912 aaKnown RBP16.57■□□□□ 0.24
TRAPPC1-206ENST00000573989 CHMP4AQ9BY43 222 aa16.57■□□□□ 0.24
TRAPPC1-206ENST00000573989 C4AP0C0L4 1744 aa16.56■□□□□ 0.24
TRAPPC1-206ENST00000573989 COL15A1P39059 1388 aa16.56■□□□□ 0.24
TRAPPC1-206ENST00000573989 ZPR1O75312 459 aa16.56■□□□□ 0.24
TRAPPC1-206ENST00000573989 HOXB7P09629 217 aa16.56■□□□□ 0.24
TRAPPC1-206ENST00000573989 ATF5Q9Y2D1 282 aaPredicted RBP16.56■□□□□ 0.24
TRAPPC1-206ENST00000573989 PRAMEF22A3QJZ6 481 aa16.55■□□□□ 0.24
TRAPPC1-206ENST00000573989 A1BGP04217 495 aa16.55■□□□□ 0.24
TRAPPC1-206ENST00000573989 AMIGO3Q86WK7 504 aa16.55■□□□□ 0.24
TRAPPC1-206ENST00000573989 PPP1R1BQ9UD71 204 aaPredicted RBP16.55■□□□□ 0.24
TRAPPC1-206ENST00000573989 ZNF330Q9Y3S2 320 aaPredicted RBP16.55■□□□□ 0.24
TRAPPC1-206ENST00000573989 ERBB4Q15303 1308 aa16.54■□□□□ 0.24
TRAPPC1-206ENST00000573989 COL24A1Q17RW2 1714 aa16.53■□□□□ 0.24
TRAPPC1-206ENST00000573989 EIF2S2P20042 333 aaKnown RBP16.53■□□□□ 0.24
TRAPPC1-206ENST00000573989 EIF5P55010 431 aaKnown RBP16.53■□□□□ 0.24
TRAPPC1-206ENST00000573989 SMIM5Q71RC9 77 aa16.53■□□□□ 0.24
TRAPPC1-206ENST00000573989 NLGN1Q8N2Q7 840 aa16.53■□□□□ 0.24
TRAPPC1-206ENST00000573989 MYH16Q9H6N6 1097 aa16.53■□□□□ 0.24
TRAPPC1-206ENST00000573989 USP42Q9H9J4 1324 aaKnown RBP16.52■□□□□ 0.24
TRAPPC1-206ENST00000573989 DUSP27Q5VZP5 1158 aa16.52■□□□□ 0.24
TRAPPC1-206ENST00000573989 ARXQ96QS3 562 aa16.52■□□□□ 0.24
TRAPPC1-206ENST00000573989 NARFQ9UHQ1 456 aa16.52■□□□□ 0.24
TRAPPC1-206ENST00000573989 GOLGA2Q08379 1002 aa16.51■□□□□ 0.23
TRAPPC1-206ENST00000573989 MSL1Q68DK7 614 aa16.51■□□□□ 0.23
TRAPPC1-206ENST00000573989 PTGER2P43116 358 aa16.5■□□□□ 0.23
TRAPPC1-206ENST00000573989 HDGFL1Q5TGJ6 251 aa16.5■□□□□ 0.23
TRAPPC1-206ENST00000573989 TSR2Q969E8 191 aaKnown RBP16.5■□□□□ 0.23
TRAPPC1-206ENST00000573989 NBPF26B4DH59 902 aa16.49■□□□□ 0.23
TRAPPC1-206ENST00000573989 GYS1P13807 737 aa16.49■□□□□ 0.23
TRAPPC1-206ENST00000573989 PIP4K2AP48426 406 aaPredicted RBP16.49■□□□□ 0.23
TRAPPC1-206ENST00000573989 KRT24Q2M2I5 525 aa16.49■□□□□ 0.23
TRAPPC1-206ENST00000573989 USPL1Q5W0Q7 1092 aa16.49■□□□□ 0.23
TRAPPC1-206ENST00000573989 NBPF10Q6P3W6 841 aaKnown RBP16.49■□□□□ 0.23
TRAPPC1-206ENST00000573989 DZIP3Q86Y13 1208 aaKnown RBP16.49■□□□□ 0.23
TRAPPC1-206ENST00000573989 NBPF15Q8N660 670 aa16.49■□□□□ 0.23
TRAPPC1-206ENST00000573989 SRP68Q9UHB9 627 aaKnown RBP16.49■□□□□ 0.23
TRAPPC1-206ENST00000573989 ZNF521Q96K83 1311 aa16.48■□□□□ 0.23
TRAPPC1-206ENST00000573989 FANCIQ9NVI1 1328 aa16.48■□□□□ 0.23
TRAPPC1-206ENST00000573989 MYL6BP14649 208 aa16.48■□□□□ 0.23
TRAPPC1-206ENST00000573989 SGIP1Q9BQI5 828 aa16.48■□□□□ 0.23
TRAPPC1-206ENST00000573989 TBC1D2BQ9UPU7 963 aa16.48■□□□□ 0.23
TRAPPC1-206ENST00000573989 ZNF652Q9Y2D9 606 aa16.48■□□□□ 0.23
TRAPPC1-206ENST00000573989 SCN7AQ01118 1682 aa16.47■□□□□ 0.23
TRAPPC1-206ENST00000573989 E9PSI1 815 aa16.47■□□□□ 0.23
TRAPPC1-206ENST00000573989 ELL2O00472 640 aaPredicted RBP16.47■□□□□ 0.23
TRAPPC1-206ENST00000573989 KIF6Q6ZMV9 814 aa16.47■□□□□ 0.23
TRAPPC1-206ENST00000573989 NECTIN2Q92692 538 aa16.47■□□□□ 0.23
TRAPPC1-206ENST00000573989 DDX21Q9NR30 783 aaKnown RBP eCLIP16.47■□□□□ 0.23
TRAPPC1-206ENST00000573989 DBF4Q9UBU7 674 aaPredicted RBP16.47■□□□□ 0.23
TRAPPC1-206ENST00000573989 BCORQ6W2J9 1755 aa16.46■□□□□ 0.23
TRAPPC1-206ENST00000573989 RGL2O15211 777 aa16.46■□□□□ 0.23
TRAPPC1-206ENST00000573989 TWISTNBQ3B726 338 aaPredicted RBP16.46■□□□□ 0.23
TRAPPC1-206ENST00000573989 CCDC30Q5VVM6 783 aa16.46■□□□□ 0.23
TRAPPC1-206ENST00000573989 CLEC4GQ6UXB4 293 aa16.46■□□□□ 0.23
TRAPPC1-206ENST00000573989 C8orf58Q8NAV2 365 aa16.46■□□□□ 0.23
TRAPPC1-206ENST00000573989 PARP3Q9Y6F1 533 aa16.46■□□□□ 0.23
TRAPPC1-206ENST00000573989 CACNA1FO60840 1977 aa16.46■□□□□ 0.22
TRAPPC1-206ENST00000573989 MMP10P09238 476 aa16.45■□□□□ 0.22
TRAPPC1-206ENST00000573989 HNRNPUQ00839 825 aaKnown RBP eCLIP16.45■□□□□ 0.22
TRAPPC1-206ENST00000573989 FKBP8Q14318 412 aa16.45■□□□□ 0.22
TRAPPC1-206ENST00000573989 HYPKQ9NX55 129 aa16.45■□□□□ 0.22
TRAPPC1-206ENST00000573989 CAMTA2O94983 1202 aa16.44■□□□□ 0.22
TRAPPC1-206ENST00000573989 PDIA6Q15084 440 aa16.44■□□□□ 0.22
TRAPPC1-206ENST00000573989 STK31Q9BXU1 1019 aa16.44■□□□□ 0.22
TRAPPC1-206ENST00000573989 CHPF2Q9P2E5 772 aa16.44■□□□□ 0.22
TRAPPC1-206ENST00000573989 ERVV-1B6SEH8 477 aa16.43■□□□□ 0.22
TRAPPC1-206ENST00000573989 EXOSC9Q06265 439 aaKnown RBP16.43■□□□□ 0.22
TRAPPC1-206ENST00000573989 KLHL34Q8N239 644 aa16.43■□□□□ 0.22
TRAPPC1-206ENST00000573989 SPINK5Q9NQ38 1064 aaPredicted RBP16.43■□□□□ 0.22
TRAPPC1-206ENST00000573989 NUP98P52948 1817 aa16.42■□□□□ 0.22
TRAPPC1-206ENST00000573989 TSPYL6Q8N831 410 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms