RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 ZNF853P0CG23 659 aa13.01□□□□□ -0.33
CLN3-220ENST00000566040 EIF4A1P60842 406 aaKnown RBP13.01□□□□□ -0.33
CLN3-220ENST00000566040 RTF1Q92541 710 aaKnown RBP13.01□□□□□ -0.33
CLN3-220ENST00000566040 PNNQ9H307 717 aaKnown RBP13.01□□□□□ -0.33
CLN3-220ENST00000566040 CCDC87Q9NVE4 849 aa13.01□□□□□ -0.33
CLN3-220ENST00000566040 USP16Q9Y5T5 823 aa13.01□□□□□ -0.33
CLN3-220ENST00000566040 COL15A1P39059 1388 aa13.01□□□□□ -0.33
CLN3-220ENST00000566040 COL11A2P13942 1736 aaPredicted RBP13□□□□□ -0.33
CLN3-220ENST00000566040 NBPF26B4DH59 902 aa13□□□□□ -0.33
CLN3-220ENST00000566040 PHF14O94880 888 aa13□□□□□ -0.33
CLN3-220ENST00000566040 NEUROD2Q15784 382 aa13□□□□□ -0.33
CLN3-220ENST00000566040 KRT24Q2M2I5 525 aa13□□□□□ -0.33
CLN3-220ENST00000566040 MSL1Q68DK7 614 aa13□□□□□ -0.33
CLN3-220ENST00000566040 NBPF10Q6P3W6 841 aaKnown RBP13□□□□□ -0.33
CLN3-220ENST00000566040 NBPF15Q8N660 670 aa13□□□□□ -0.33
CLN3-220ENST00000566040 ARHGEF1Q92888 912 aaKnown RBP13□□□□□ -0.33
CLN3-220ENST00000566040 BCL2L12Q9HB09 334 aa13□□□□□ -0.33
CLN3-220ENST00000566040 USP42Q9H9J4 1324 aaKnown RBP12.99□□□□□ -0.33
CLN3-220ENST00000566040 CHL1O00533 1208 aa12.99□□□□□ -0.33
CLN3-220ENST00000566040 LRP10Q7Z4F1 713 aa12.99□□□□□ -0.33
CLN3-220ENST00000566040 SLC16A10Q8TF71 515 aa12.99□□□□□ -0.33
CLN3-220ENST00000566040 FMNL2Q96PY5 1086 aa12.99□□□□□ -0.33
CLN3-220ENST00000566040 SPON1Q9HCB6 807 aa12.99□□□□□ -0.33
CLN3-220ENST00000566040 SRP68Q9UHB9 627 aaKnown RBP12.99□□□□□ -0.33
CLN3-220ENST00000566040 ARFGEF2Q9Y6D5 1785 aa12.99□□□□□ -0.33
CLN3-220ENST00000566040 UTRNP46939 3433 aa12.98□□□□□ -0.33
CLN3-220ENST00000566040 GIGYF1O75420 1035 aaPredicted RBP12.98□□□□□ -0.33
CLN3-220ENST00000566040 A1BGP04217 495 aa12.98□□□□□ -0.33
CLN3-220ENST00000566040 GYS1P13807 737 aa12.98□□□□□ -0.33
CLN3-220ENST00000566040 PIP4K2AP48426 406 aaPredicted RBP12.98□□□□□ -0.33
CLN3-220ENST00000566040 EIF5P55010 431 aaKnown RBP12.98□□□□□ -0.33
CLN3-220ENST00000566040 TTC5Q8N0Z6 440 aa12.98□□□□□ -0.33
CLN3-220ENST00000566040 ZNF521Q96K83 1311 aa12.97□□□□□ -0.33
CLN3-220ENST00000566040 RTCBQ9Y3I0 505 aaKnown RBP12.97□□□□□ -0.33
CLN3-220ENST00000566040 TNRC6CQ9HCJ0 1690 aaKnown RBP12.96□□□□□ -0.33
CLN3-220ENST00000566040 NEFMP07197 916 aa12.96□□□□□ -0.33
CLN3-220ENST00000566040 ADRA2BP18089 450 aa12.96□□□□□ -0.33
CLN3-220ENST00000566040 CCDC27Q2M243 656 aa12.96□□□□□ -0.33
CLN3-220ENST00000566040 MIER1Q8N108 512 aa12.96□□□□□ -0.33
CLN3-220ENST00000566040 C10orf71Q711Q0 1435 aa12.96□□□□□ -0.34
CLN3-220ENST00000566040 LAMB2P55268 1798 aa12.95□□□□□ -0.34
CLN3-220ENST00000566040 CCER2I3L3R5 266 aa12.95□□□□□ -0.34
CLN3-220ENST00000566040 DDR1Q08345 913 aa12.95□□□□□ -0.34
CLN3-220ENST00000566040 LMOD3Q0VAK6 560 aa12.95□□□□□ -0.34
CLN3-220ENST00000566040 PDIA6Q15084 440 aa12.95□□□□□ -0.34
CLN3-220ENST00000566040 WWC1Q8IX03 1113 aa12.95□□□□□ -0.34
CLN3-220ENST00000566040 FLAD1Q8NFF5 587 aa12.95□□□□□ -0.34
CLN3-220ENST00000566040 SPINK5Q9NQ38 1064 aaPredicted RBP12.95□□□□□ -0.34
CLN3-220ENST00000566040 MBIPQ9NS73 344 aa12.95□□□□□ -0.34
CLN3-220ENST00000566040 BABAM1Q9NWV8 329 aa12.95□□□□□ -0.34
CLN3-220ENST00000566040 TSPYL4Q9UJ04 414 aa12.95□□□□□ -0.34
CLN3-220ENST00000566040 SNRPA1P09661 255 aaKnown RBP12.94□□□□□ -0.34
CLN3-220ENST00000566040 FKBP8Q14318 412 aa12.94□□□□□ -0.34
CLN3-220ENST00000566040 NCBP3Q53F19 620 aaKnown RBP12.94□□□□□ -0.34
CLN3-220ENST00000566040 DIEXFQ68CQ4 756 aaKnown RBP12.94□□□□□ -0.34
CLN3-220ENST00000566040 FAM9BQ8IZU0 186 aa12.94□□□□□ -0.34
CLN3-220ENST00000566040 CFAP44Q96MT7 982 aa12.94□□□□□ -0.34
CLN3-220ENST00000566040 CACNA1FO60840 1977 aa12.94□□□□□ -0.34
CLN3-220ENST00000566040 CACNA1SQ13698 1873 aa12.93□□□□□ -0.34
CLN3-220ENST00000566040 ARFGEF1Q9Y6D6 1849 aa12.93□□□□□ -0.34
CLN3-220ENST00000566040 CANXP27824 592 aaKnown RBP12.93□□□□□ -0.34
CLN3-220ENST00000566040 PROSER3Q2NL68 480 aa12.93□□□□□ -0.34
CLN3-220ENST00000566040 TRAPPC3LQ5T215 181 aa12.93□□□□□ -0.34
CLN3-220ENST00000566040 FHDC1Q9C0D6 1143 aaPredicted RBP12.93□□□□□ -0.34
CLN3-220ENST00000566040 NARFQ9UHQ1 456 aa12.93□□□□□ -0.34
CLN3-220ENST00000566040 PXDNLA1KZ92 1463 aa12.92□□□□□ -0.34
CLN3-220ENST00000566040 CAMTA2O94983 1202 aa12.92□□□□□ -0.34
CLN3-220ENST00000566040 IL6STP40189 918 aaPredicted RBP12.92□□□□□ -0.34
CLN3-220ENST00000566040 USPL1Q5W0Q7 1092 aa12.92□□□□□ -0.34
CLN3-220ENST00000566040 NLGN2Q8NFZ4 835 aa12.92□□□□□ -0.34
CLN3-220ENST00000566040 ARXQ96QS3 562 aa12.92□□□□□ -0.34
CLN3-220ENST00000566040 TEX13AQ9BXU3 409 aaPredicted RBP12.92□□□□□ -0.34
CLN3-220ENST00000566040 IFT57Q9NWB7 429 aa12.92□□□□□ -0.34
CLN3-220ENST00000566040 CARMIL3Q8ND23 1372 aa12.92□□□□□ -0.34
CLN3-220ENST00000566040 DDX60Q8IY21 1712 aaKnown RBP12.91□□□□□ -0.34
CLN3-220ENST00000566040 MSH5O43196 834 aa12.91□□□□□ -0.34
CLN3-220ENST00000566040 STARD3NLO95772 234 aa12.91□□□□□ -0.34
CLN3-220ENST00000566040 TM4SF1P30408 202 aa12.91□□□□□ -0.34
CLN3-220ENST00000566040 POLRMTO00411 1230 aaKnown RBP12.9□□□□□ -0.34
CLN3-220ENST00000566040 ANXA1P04083 346 aa12.9□□□□□ -0.34
CLN3-220ENST00000566040 MMP10P09238 476 aa12.9□□□□□ -0.34
CLN3-220ENST00000566040 C8orf58Q8NAV2 365 aa12.9□□□□□ -0.34
CLN3-220ENST00000566040 TSR2Q969E8 191 aaKnown RBP12.9□□□□□ -0.34
CLN3-220ENST00000566040 SYT17Q9BSW7 474 aa12.9□□□□□ -0.34
CLN3-220ENST00000566040 IL16Q14005 1332 aa12.89□□□□□ -0.35
CLN3-220ENST00000566040 HMGB2P26583 209 aaKnown RBP12.89□□□□□ -0.35
CLN3-220ENST00000566040 RFC4P35249 363 aa12.89□□□□□ -0.35
CLN3-220ENST00000566040 NFIXQ14938 502 aa12.89□□□□□ -0.35
CLN3-220ENST00000566040 TSPYL6Q8N831 410 aa12.89□□□□□ -0.35
CLN3-220ENST00000566040 TBC1D2BQ9UPU7 963 aa12.89□□□□□ -0.35
CLN3-220ENST00000566040 CHD4Q14839 1912 aa12.89□□□□□ -0.35
CLN3-220ENST00000566040 FANCIQ9NVI1 1328 aa12.88□□□□□ -0.35
CLN3-220ENST00000566040 TTLL7Q6ZT98 887 aa12.88□□□□□ -0.35
CLN3-220ENST00000566040 LAS1LQ9Y4W2 734 aaKnown RBP12.88□□□□□ -0.35
CLN3-220ENST00000566040 ERBB4Q15303 1308 aa12.88□□□□□ -0.35
CLN3-220ENST00000566040 COL4A1P02462 1669 aa12.87□□□□□ -0.35
CLN3-220ENST00000566040 GNAI1P63096 354 aa12.87□□□□□ -0.35
CLN3-220ENST00000566040 HLFQ16534 295 aa12.87□□□□□ -0.35
CLN3-220ENST00000566040 TBC1D9BQ66K14 1250 aa12.87□□□□□ -0.35
CLN3-220ENST00000566040 SALL2Q9Y467 1007 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms