RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 EIF4A1P60842 406 aaKnown RBP18.48■□□□□ 0.55
PTCH1-226ENST00000553011 MTFR1LQ9H019 292 aa18.48■□□□□ 0.55
PTCH1-226ENST00000553011 SPON1Q9HCB6 807 aa18.48■□□□□ 0.55
PTCH1-226ENST00000553011 LAS1LQ9Y4W2 734 aaKnown RBP18.48■□□□□ 0.55
PTCH1-226ENST00000553011 STARD3NLO95772 234 aa18.47■□□□□ 0.55
PTCH1-226ENST00000553011 SLC16A10Q8TF71 515 aa18.47■□□□□ 0.55
PTCH1-226ENST00000553011 TEX13AQ9BXU3 409 aaPredicted RBP18.47■□□□□ 0.55
PTCH1-226ENST00000553011 ZBTB1Q9Y2K1 713 aa18.47■□□□□ 0.55
PTCH1-226ENST00000553011 USP16Q9Y5T5 823 aa18.47■□□□□ 0.55
PTCH1-226ENST00000553011 CHL1O00533 1208 aa18.46■□□□□ 0.55
PTCH1-226ENST00000553011 SNRPA1P09661 255 aaKnown RBP18.46■□□□□ 0.55
PTCH1-226ENST00000553011 BABAM1Q9NWV8 329 aa18.46■□□□□ 0.55
PTCH1-226ENST00000553011 TRAPPC3LQ5T215 181 aa18.45■□□□□ 0.54
PTCH1-226ENST00000553011 MSL1Q68DK7 614 aa18.45■□□□□ 0.54
PTCH1-226ENST00000553011 ARHGEF1Q92888 912 aaKnown RBP18.45■□□□□ 0.54
PTCH1-226ENST00000553011 SALL2Q9Y467 1007 aaPredicted RBP18.45■□□□□ 0.54
PTCH1-226ENST00000553011 SOS1Q07889 1333 aaPredicted RBP18.45■□□□□ 0.54
PTCH1-226ENST00000553011 A1BGP04217 495 aa18.44■□□□□ 0.54
PTCH1-226ENST00000553011 ADRA2BP18089 450 aa18.44■□□□□ 0.54
PTCH1-226ENST00000553011 CANXP27824 592 aaKnown RBP18.44■□□□□ 0.54
PTCH1-226ENST00000553011 PTGER2P43116 358 aa18.44■□□□□ 0.54
PTCH1-226ENST00000553011 CCDC27Q2M243 656 aa18.44■□□□□ 0.54
PTCH1-226ENST00000553011 GIGYF1O75420 1035 aaPredicted RBP18.43■□□□□ 0.54
PTCH1-226ENST00000553011 ZNF853P0CG23 659 aa18.43■□□□□ 0.54
PTCH1-226ENST00000553011 WWC1Q8IX03 1113 aa18.43■□□□□ 0.54
PTCH1-226ENST00000553011 CFAP44Q96MT7 982 aa18.43■□□□□ 0.54
PTCH1-226ENST00000553011 SGIP1Q9BQI5 828 aa18.43■□□□□ 0.54
PTCH1-226ENST00000553011 PIP4K2AP48426 406 aaPredicted RBP18.42■□□□□ 0.54
PTCH1-226ENST00000553011 CALD1Q05682 793 aaKnown RBP18.42■□□□□ 0.54
PTCH1-226ENST00000553011 COL15A1P39059 1388 aa18.42■□□□□ 0.54
PTCH1-226ENST00000553011 RFC4P35249 363 aa18.41■□□□□ 0.54
PTCH1-226ENST00000553011 KRT24Q2M2I5 525 aa18.41■□□□□ 0.54
PTCH1-226ENST00000553011 NCBP3Q53F19 620 aaKnown RBP18.41■□□□□ 0.54
PTCH1-226ENST00000553011 MBIPQ9NS73 344 aa18.41■□□□□ 0.54
PTCH1-226ENST00000553011 IFT57Q9NWB7 429 aa18.41■□□□□ 0.54
PTCH1-226ENST00000553011 SRP68Q9UHB9 627 aaKnown RBP18.41■□□□□ 0.54
PTCH1-226ENST00000553011 EIF5P55010 431 aaKnown RBP18.4■□□□□ 0.54
PTCH1-226ENST00000553011 GNAI1P63096 354 aa18.4■□□□□ 0.54
PTCH1-226ENST00000553011 ZNF330Q9Y3S2 320 aaPredicted RBP18.39■□□□□ 0.53
PTCH1-226ENST00000553011 USP42Q9H9J4 1324 aaKnown RBP18.39■□□□□ 0.53
PTCH1-226ENST00000553011 NBPF26B4DH59 902 aa18.38■□□□□ 0.53
PTCH1-226ENST00000553011 GYS1P13807 737 aa18.38■□□□□ 0.53
PTCH1-226ENST00000553011 NBPF10Q6P3W6 841 aaKnown RBP18.38■□□□□ 0.53
PTCH1-226ENST00000553011 NBPF15Q8N660 670 aa18.38■□□□□ 0.53
PTCH1-226ENST00000553011 PPP1R1BQ9UD71 204 aaPredicted RBP18.38■□□□□ 0.53
PTCH1-226ENST00000553011 POLD1P28340 1107 aa18.37■□□□□ 0.53
PTCH1-226ENST00000553011 IL6STP40189 918 aaPredicted RBP18.37■□□□□ 0.53
PTCH1-226ENST00000553011 SCN7AQ01118 1682 aa18.37■□□□□ 0.53
PTCH1-226ENST00000553011 EIF2S2P20042 333 aaKnown RBP18.36■□□□□ 0.53
PTCH1-226ENST00000553011 USPL1Q5W0Q7 1092 aa18.36■□□□□ 0.53
PTCH1-226ENST00000553011 BCORQ6W2J9 1755 aa18.36■□□□□ 0.53
PTCH1-226ENST00000553011 TSR2Q969E8 191 aaKnown RBP18.36■□□□□ 0.53
PTCH1-226ENST00000553011 ARXQ96QS3 562 aa18.36■□□□□ 0.53
PTCH1-226ENST00000553011 NARFQ9UHQ1 456 aa18.36■□□□□ 0.53
PTCH1-226ENST00000553011 IL16Q14005 1332 aa18.35■□□□□ 0.53
PTCH1-226ENST00000553011 A0A087WZG4 1122 aa18.35■□□□□ 0.53
PTCH1-226ENST00000553011 ZPR1O75312 459 aa18.35■□□□□ 0.53
PTCH1-226ENST00000553011 NGEFQ8N5V2 710 aa18.35■□□□□ 0.53
PTCH1-226ENST00000553011 NECTIN2Q92692 538 aa18.35■□□□□ 0.53
PTCH1-226ENST00000553011 TBC1D2BQ9UPU7 963 aa18.35■□□□□ 0.53
PTCH1-226ENST00000553011 FKBP8Q14318 412 aa18.34■□□□□ 0.53
PTCH1-226ENST00000553011 WDR63Q8IWG1 891 aa18.34■□□□□ 0.53
PTCH1-226ENST00000553011 MMP10P09238 476 aa18.33■□□□□ 0.52
PTCH1-226ENST00000553011 DUSP27Q5VZP5 1158 aa18.33■□□□□ 0.52
PTCH1-226ENST00000553011 NPM2Q86SE8 214 aaKnown RBP18.33■□□□□ 0.52
PTCH1-226ENST00000553011 NLGN1Q8N2Q7 840 aa18.33■□□□□ 0.52
PTCH1-226ENST00000553011 BCL2L12Q9HB09 334 aa18.33■□□□□ 0.52
PTCH1-226ENST00000553011 ZNF521Q96K83 1311 aa18.32■□□□□ 0.52
PTCH1-226ENST00000553011 ELL2O00472 640 aaPredicted RBP18.32■□□□□ 0.52
PTCH1-226ENST00000553011 MYL6BP14649 208 aa18.32■□□□□ 0.52
PTCH1-226ENST00000553011 DZIP3Q86Y13 1208 aaKnown RBP18.32■□□□□ 0.52
PTCH1-226ENST00000553011 C8orf58Q8NAV2 365 aa18.32■□□□□ 0.52
PTCH1-226ENST00000553011 SPINK5Q9NQ38 1064 aaPredicted RBP18.32■□□□□ 0.52
PTCH1-226ENST00000553011 ERBB4Q15303 1308 aa18.31■□□□□ 0.52
PTCH1-226ENST00000553011 NUP98P52948 1817 aa18.31■□□□□ 0.52
PTCH1-226ENST00000553011 AFDNP55196 1824 aaKnown RBP18.31■□□□□ 0.52
PTCH1-226ENST00000553011 ANXA1P04083 346 aa18.31■□□□□ 0.52
PTCH1-226ENST00000553011 HOXB7P09629 217 aa18.31■□□□□ 0.52
PTCH1-226ENST00000553011 PROSER3Q2NL68 480 aa18.31■□□□□ 0.52
PTCH1-226ENST00000553011 FANCIQ9NVI1 1328 aa18.3■□□□□ 0.52
PTCH1-226ENST00000553011 CAMTA2O94983 1202 aa18.3■□□□□ 0.52
PTCH1-226ENST00000553011 PDIA6Q15084 440 aa18.3■□□□□ 0.52
PTCH1-226ENST00000553011 HDGFL1Q5TGJ6 251 aa18.3■□□□□ 0.52
PTCH1-226ENST00000553011 KLHL34Q8N239 644 aa18.3■□□□□ 0.52
PTCH1-226ENST00000553011 TSPYL6Q8N831 410 aa18.3■□□□□ 0.52
PTCH1-226ENST00000553011 FHDC1Q9C0D6 1143 aaPredicted RBP18.3■□□□□ 0.52
PTCH1-226ENST00000553011 DDR1Q08345 913 aa18.29■□□□□ 0.52
PTCH1-226ENST00000553011 NFIXQ14938 502 aa18.28■□□□□ 0.52
PTCH1-226ENST00000553011 TTLL7Q6ZT98 887 aa18.28■□□□□ 0.52
PTCH1-226ENST00000553011 LRP10Q7Z4F1 713 aa18.28■□□□□ 0.52
PTCH1-226ENST00000553011 CHPF2Q9P2E5 772 aa18.28■□□□□ 0.52
PTCH1-226ENST00000553011 TM4SF1P30408 202 aa18.27■□□□□ 0.52
PTCH1-226ENST00000553011 BICDL1Q6ZP65 573 aa18.27■□□□□ 0.52
PTCH1-226ENST00000553011 SYT17Q9BSW7 474 aa18.27■□□□□ 0.52
PTCH1-226ENST00000553011 PARP3Q9Y6F1 533 aa18.27■□□□□ 0.52
PTCH1-226ENST00000553011 KIF13BQ9NQT8 1826 aa18.27■□□□□ 0.52
PTCH1-226ENST00000553011 TBC1D9BQ66K14 1250 aa18.26■□□□□ 0.51
PTCH1-226ENST00000553011 DDX21Q9NR30 783 aaKnown RBP eCLIP18.26■□□□□ 0.51
PTCH1-226ENST00000553011 CACNA1FO60840 1977 aa18.25■□□□□ 0.51
PTCH1-226ENST00000553011 POLRMTO00411 1230 aaKnown RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms