RNA–Protein interactions for RNA: ENST00000545097.1

CCR3-208, Transcript of C-C motif chemokine receptor 3, human

TSL 1 (best) BASIC

Gene CCR3, Length 1,786 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCR3-208	ENST00000545097	CNKSR2	Q8WXI2	1034 aa		10.8	□□□□□ -0.68
CCR3-208	ENST00000545097	SYT17	Q9BSW7	474 aa		10.8	□□□□□ -0.68
CCR3-208	ENST00000545097	TEF	Q10587	303 aa		10.8	□□□□□ -0.68
CCR3-208	ENST00000545097	RC3H1	Q5TC82	1133 aa	Known RBP	10.8	□□□□□ -0.68
CCR3-208	ENST00000545097	SLC16A10	Q8TF71	515 aa		10.8	□□□□□ -0.68
CCR3-208	ENST00000545097	FOXD4L1	Q9NU39	408 aa		10.8	□□□□□ -0.68
CCR3-208	ENST00000545097	ANKRD31	Q8N7Z5	1873 aa		10.79	□□□□□ -0.68
CCR3-208	ENST00000545097	BTBD11	A6QL63	1104 aa		10.79	□□□□□ -0.68
CCR3-208	ENST00000545097	GYS1	P13807	737 aa		10.79	□□□□□ -0.68
CCR3-208	ENST00000545097	KLHL34	Q8N239	644 aa		10.79	□□□□□ -0.68
CCR3-208	ENST00000545097	BCL2L12	Q9HB09	334 aa		10.79	□□□□□ -0.68
CCR3-208	ENST00000545097	NRXN2	Q9P2S2	1712 aa		10.79	□□□□□ -0.68
CCR3-208	ENST00000545097	A1BG	P04217	495 aa		10.78	□□□□□ -0.68
CCR3-208	ENST00000545097	TMPO	P42166	694 aa	Known RBP	10.78	□□□□□ -0.68
CCR3-208	ENST00000545097	FKBP8	Q14318	412 aa		10.78	□□□□□ -0.68
CCR3-208	ENST00000545097	CCDC87	Q9NVE4	849 aa		10.78	□□□□□ -0.68
CCR3-208	ENST00000545097	TRIM35	Q9UPQ4	493 aa		10.78	□□□□□ -0.68
CCR3-208	ENST00000545097	RTCB	Q9Y3I0	505 aa	Known RBP	10.78	□□□□□ -0.68
CCR3-208	ENST00000545097	USP16	Q9Y5T5	823 aa		10.78	□□□□□ -0.68
CCR3-208	ENST00000545097	DDR1	Q08345	913 aa		10.77	□□□□□ -0.68
CCR3-208	ENST00000545097	COL15A1	P39059	1388 aa		10.77	□□□□□ -0.69
CCR3-208	ENST00000545097	USP42	Q9H9J4	1324 aa	Known RBP	10.77	□□□□□ -0.69
CCR3-208	ENST00000545097	CANX	P27824	592 aa	Known RBP	10.77	□□□□□ -0.69
CCR3-208	ENST00000545097	NEUROD2	Q15784	382 aa		10.77	□□□□□ -0.69
CCR3-208	ENST00000545097	TRAPPC3L	Q5T215	181 aa		10.77	□□□□□ -0.69
CCR3-208	ENST00000545097	WWC3	Q9ULE0	1092 aa		10.77	□□□□□ -0.69
CCR3-208	ENST00000545097	COL11A2	P13942	1736 aa	Predicted RBP	10.77	□□□□□ -0.69
CCR3-208	ENST00000545097	CHD4	Q14839	1912 aa		10.77	□□□□□ -0.69
CCR3-208	ENST00000545097	NUP98	P52948	1817 aa		10.76	□□□□□ -0.69
CCR3-208	ENST00000545097	MAPK8IP3	Q9UPT6	1336 aa		10.76	□□□□□ -0.69
CCR3-208	ENST00000545097	NBPF26	B4DH59	902 aa		10.76	□□□□□ -0.69
CCR3-208	ENST00000545097	MMP10	P09238	476 aa		10.76	□□□□□ -0.69
CCR3-208	ENST00000545097	RIPK4	P57078	832 aa		10.76	□□□□□ -0.69
CCR3-208	ENST00000545097	KRT24	Q2M2I5	525 aa		10.76	□□□□□ -0.69
CCR3-208	ENST00000545097	NBPF10	Q6P3W6	841 aa	Known RBP	10.76	□□□□□ -0.69
CCR3-208	ENST00000545097	TTC5	Q8N0Z6	440 aa		10.76	□□□□□ -0.69
CCR3-208	ENST00000545097	VSIG10	Q8N0Z9	540 aa		10.76	□□□□□ -0.69
CCR3-208	ENST00000545097	NBPF15	Q8N660	670 aa		10.76	□□□□□ -0.69
CCR3-208	ENST00000545097	RTF1	Q92541	710 aa	Known RBP	10.76	□□□□□ -0.69
CCR3-208	ENST00000545097	HTATSF1	O43719	755 aa	Known RBP	10.75	□□□□□ -0.69
CCR3-208	ENST00000545097	POLD1	P28340	1107 aa		10.75	□□□□□ -0.69
CCR3-208	ENST00000545097	USPL1	Q5W0Q7	1092 aa		10.75	□□□□□ -0.69
CCR3-208	ENST00000545097	FLAD1	Q8NFF5	587 aa		10.75	□□□□□ -0.69
CCR3-208	ENST00000545097	CACNA1S	Q13698	1873 aa		10.75	□□□□□ -0.69
CCR3-208	ENST00000545097	PXDNL	A1KZ92	1463 aa		10.75	□□□□□ -0.69
CCR3-208	ENST00000545097	EIF5	P55010	431 aa	Known RBP	10.75	□□□□□ -0.69
CCR3-208	ENST00000545097	TAF7	Q15545	349 aa	Predicted RBP	10.75	□□□□□ -0.69
CCR3-208	ENST00000545097	C10orf71	Q711Q0	1435 aa		10.75	□□□□□ -0.69
CCR3-208	ENST00000545097	FMNL2	Q96PY5	1086 aa		10.75	□□□□□ -0.69
CCR3-208	ENST00000545097	CARMIL3	Q8ND23	1372 aa		10.74	□□□□□ -0.69
CCR3-208	ENST00000545097	DLEC1	Q9Y238	1755 aa		10.74	□□□□□ -0.69
CCR3-208	ENST00000545097	YBX3	P16989	372 aa	Known RBP eCLIP	10.74	□□□□□ -0.69
CCR3-208	ENST00000545097	RFC4	P35249	363 aa		10.74	□□□□□ -0.69
CCR3-208	ENST00000545097	EIF4A1	P60842	406 aa	Known RBP	10.74	□□□□□ -0.69
CCR3-208	ENST00000545097	WDR43	Q15061	677 aa	Known RBP eCLIP	10.74	□□□□□ -0.69
CCR3-208	ENST00000545097	RUNDC1	Q96C34	613 aa		10.74	□□□□□ -0.69
CCR3-208	ENST00000545097	APAF1	O14727	1248 aa		10.73	□□□□□ -0.69
CCR3-208	ENST00000545097	PNISR	Q8TF01	805 aa	Known RBP	10.73	□□□□□ -0.69
CCR3-208	ENST00000545097	TBC1D2B	Q9UPU7	963 aa		10.72	□□□□□ -0.69
CCR3-208	ENST00000545097	TNRC6C	Q9HCJ0	1690 aa	Known RBP	10.72	□□□□□ -0.69
CCR3-208	ENST00000545097	POLRMT	O00411	1230 aa	Known RBP	10.72	□□□□□ -0.69
CCR3-208	ENST00000545097	TM4SF1	P30408	202 aa		10.72	□□□□□ -0.69
CCR3-208	ENST00000545097	NFIX	Q14938	502 aa		10.72	□□□□□ -0.69
CCR3-208	ENST00000545097	NARF	Q9UHQ1	456 aa		10.72	□□□□□ -0.69
CCR3-208	ENST00000545097	ZNF330	Q9Y3S2	320 aa	Predicted RBP	10.72	□□□□□ -0.69
CCR3-208	ENST00000545097	GIGYF1	O75420	1035 aa	Predicted RBP	10.71	□□□□□ -0.69
CCR3-208	ENST00000545097	CAMTA2	O94983	1202 aa		10.71	□□□□□ -0.69
CCR3-208	ENST00000545097	ANXA1	P04083	346 aa		10.71	□□□□□ -0.69
CCR3-208	ENST00000545097	PROSER3	Q2NL68	480 aa		10.71	□□□□□ -0.69
CCR3-208	ENST00000545097	CCDC24	Q8N4L8	307 aa		10.71	□□□□□ -0.69
CCR3-208	ENST00000545097	ARFGEF1	Q9Y6D6	1849 aa		10.71	□□□□□ -0.7
CCR3-208	ENST00000545097	ANKRD36C	Q5JPF3	1778 aa		10.71	□□□□□ -0.7
CCR3-208	ENST00000545097	SNRPA1	P09661	255 aa	Known RBP	10.7	□□□□□ -0.7
CCR3-208	ENST00000545097	TBC1D9B	Q66K14	1250 aa		10.7	□□□□□ -0.7
CCR3-208	ENST00000545097	MRS2	Q9HD23	443 aa		10.7	□□□□□ -0.7
CCR3-208	ENST00000545097	STARD3NL	O95772	234 aa		10.7	□□□□□ -0.7
CCR3-208	ENST00000545097	LRP10	Q7Z4F1	713 aa		10.7	□□□□□ -0.7
CCR3-208	ENST00000545097	TSPYL4	Q9UJ04	414 aa		10.7	□□□□□ -0.7
CCR3-208	ENST00000545097		A0A0G2JLW4	131 aa		10.69	□□□□□ -0.7
CCR3-208	ENST00000545097	CHL1	O00533	1208 aa		10.69	□□□□□ -0.7
CCR3-208	ENST00000545097	ANP32C	O43423	234 aa		10.69	□□□□□ -0.7
CCR3-208	ENST00000545097	KCNA3	P22001	575 aa		10.69	□□□□□ -0.7
CCR3-208	ENST00000545097	IL6ST	P40189	918 aa	Predicted RBP	10.69	□□□□□ -0.7
CCR3-208	ENST00000545097	PDIA6	Q15084	440 aa		10.69	□□□□□ -0.7
CCR3-208	ENST00000545097	HLF	Q16534	295 aa		10.69	□□□□□ -0.7
CCR3-208	ENST00000545097	BICDL1	Q6ZP65	573 aa		10.69	□□□□□ -0.7
CCR3-208	ENST00000545097	PELP1	Q8IZL8	1130 aa	Known RBP	10.69	□□□□□ -0.7
CCR3-208	ENST00000545097	NLGN1	Q8N2Q7	840 aa		10.69	□□□□□ -0.7
CCR3-208	ENST00000545097	NECTIN2	Q92692	538 aa		10.69	□□□□□ -0.7
CCR3-208	ENST00000545097	CD2AP	Q9Y5K6	639 aa		10.69	□□□□□ -0.7
CCR3-208	ENST00000545097	NEFM	P07197	916 aa		10.68	□□□□□ -0.7
CCR3-208	ENST00000545097	DPEP1	P16444	411 aa		10.68	□□□□□ -0.7
CCR3-208	ENST00000545097	TTLL7	Q6ZT98	887 aa		10.68	□□□□□ -0.7
CCR3-208	ENST00000545097	PNN	Q9H307	717 aa	Known RBP	10.68	□□□□□ -0.7
CCR3-208	ENST00000545097	LAS1L	Q9Y4W2	734 aa	Known RBP	10.68	□□□□□ -0.7
CCR3-208	ENST00000545097	CCDC88A	Q3V6T2	1871 aa		10.68	□□□□□ -0.7
CCR3-208	ENST00000545097	LAMB2	P55268	1798 aa		10.68	□□□□□ -0.7
CCR3-208	ENST00000545097	ARFGEF2	Q9Y6D5	1785 aa		10.68	□□□□□ -0.7
CCR3-208	ENST00000545097	ZNF853	P0CG23	659 aa		10.67	□□□□□ -0.7
CCR3-208	ENST00000545097	CHRNA5	P30532	468 aa		10.67	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms