RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 NOL7Q9UMY1 257 aaKnown RBP11.12□□□□□ -0.63
SMAD9-203ENST00000399275 DISP3Q9P2K9 1392 aa11.11□□□□□ -0.63
SMAD9-203ENST00000399275 TRIM27P14373 513 aa11.11□□□□□ -0.63
SMAD9-203ENST00000399275 SFPQP23246 707 aaKnown RBP eCLIP11.11□□□□□ -0.63
SMAD9-203ENST00000399275 BIRC2Q13490 618 aa11.11□□□□□ -0.63
SMAD9-203ENST00000399275 NOLC1Q14978 699 aaKnown RBP eCLIP11.11□□□□□ -0.63
SMAD9-203ENST00000399275 CCDC30Q5VVM6 783 aa11.11□□□□□ -0.63
SMAD9-203ENST00000399275 SPATA32Q96LK8 384 aa11.11□□□□□ -0.63
SMAD9-203ENST00000399275 CCDC158Q5M9N0 1113 aa11.11□□□□□ -0.63
SMAD9-203ENST00000399275 URB2Q14146 1524 aaKnown RBP11.11□□□□□ -0.63
SMAD9-203ENST00000399275 PFDN1O60925 122 aa11.11□□□□□ -0.63
SMAD9-203ENST00000399275 STAMBPO95630 424 aa11.11□□□□□ -0.63
SMAD9-203ENST00000399275 ZFYVE27Q5T4F4 411 aa11.11□□□□□ -0.63
SMAD9-203ENST00000399275 NBPF11Q86T75 865 aa11.11□□□□□ -0.63
SMAD9-203ENST00000399275 POTEDQ86YR6 584 aa11.11□□□□□ -0.63
SMAD9-203ENST00000399275 CEP57L1Q8IYX8 460 aa11.11□□□□□ -0.63
SMAD9-203ENST00000399275 ZMYM4Q5VZL5 1548 aa11.11□□□□□ -0.63
SMAD9-203ENST00000399275 SNAPC4Q5SXM2 1469 aa11.11□□□□□ -0.63
SMAD9-203ENST00000399275 UTP14CQ5TAP6 766 aaKnown RBP11.11□□□□□ -0.63
SMAD9-203ENST00000399275 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.11□□□□□ -0.636e-9■■■■■ 134.6
SMAD9-203ENST00000399275 ZMYM3Q14202 1370 aa11.11□□□□□ -0.63
SMAD9-203ENST00000399275 PDE1CQ14123 709 aaPredicted RBP11.1□□□□□ -0.63
SMAD9-203ENST00000399275 KIF4BQ2VIQ3 1234 aa11.1□□□□□ -0.63
SMAD9-203ENST00000399275 CEP135Q66GS9 1140 aa11.1□□□□□ -0.63
SMAD9-203ENST00000399275 ZNF365Q70YC5 407 aa11.1□□□□□ -0.63
SMAD9-203ENST00000399275 CEP112Q8N8E3 955 aa11.1□□□□□ -0.63
SMAD9-203ENST00000399275 IQGAP2Q13576 1575 aa11.1□□□□□ -0.63
SMAD9-203ENST00000399275 CCDC50Q8IVM0 306 aa11.1□□□□□ -0.63
SMAD9-203ENST00000399275 PPFIBP2Q8ND30 876 aa11.1□□□□□ -0.63
SMAD9-203ENST00000399275 DDX27Q96GQ7 796 aaKnown RBP11.1□□□□□ -0.63
SMAD9-203ENST00000399275 GOPCQ9HD26 462 aa11.1□□□□□ -0.63
SMAD9-203ENST00000399275 DNAJC5BQ9UF47 199 aa11.1□□□□□ -0.63
SMAD9-203ENST00000399275 PCDHB15Q9Y5E8 787 aa11.1□□□□□ -0.63
SMAD9-203ENST00000399275 IL16Q14005 1332 aa11.1□□□□□ -0.63
SMAD9-203ENST00000399275 SURF6O75683 361 aaKnown RBP11.1□□□□□ -0.63
SMAD9-203ENST00000399275 DMTNQ08495 405 aa11.1□□□□□ -0.63
SMAD9-203ENST00000399275 IFFO1Q0D2I5 559 aa11.1□□□□□ -0.63
SMAD9-203ENST00000399275 SECISBP2LQ93073 1101 aaKnown RBP11.1□□□□□ -0.63
SMAD9-203ENST00000399275 MICAL1Q8TDZ2 1067 aa11.1□□□□□ -0.63
SMAD9-203ENST00000399275 PDRG1Q9NUG6 133 aa11.1□□□□□ -0.63
SMAD9-203ENST00000399275 SCAF11Q99590 1463 aaKnown RBP11.1□□□□□ -0.63
SMAD9-203ENST00000399275 DDX58O95786 925 aaKnown RBP11.09□□□□□ -0.63
SMAD9-203ENST00000399275 ATRIPQ8WXE1 791 aa11.09□□□□□ -0.63
SMAD9-203ENST00000399275 ASXL1Q8IXJ9 1541 aa11.09□□□□□ -0.63
SMAD9-203ENST00000399275 PCK1P35558 622 aa11.09□□□□□ -0.63
SMAD9-203ENST00000399275 PIP4K2AP48426 406 aaPredicted RBP11.09□□□□□ -0.63
SMAD9-203ENST00000399275 DNAI2Q9GZS0 605 aa11.09□□□□□ -0.63
SMAD9-203ENST00000399275 KIF5CO60282 957 aa11.09□□□□□ -0.63
SMAD9-203ENST00000399275 NOL3O60936 208 aaKnown RBP11.09□□□□□ -0.63
SMAD9-203ENST00000399275 MRFAP1Q9Y605 127 aa11.09□□□□□ -0.63
SMAD9-203ENST00000399275 KLHL10Q6JEL2 608 aa11.09□□□□□ -0.63
SMAD9-203ENST00000399275 NUP160Q12769 1436 aa11.09□□□□□ -0.63
SMAD9-203ENST00000399275 A0A0G2JS52 829 aa11.08□□□□□ -0.63
SMAD9-203ENST00000399275 EPB41L2O43491 1005 aaKnown RBP11.08□□□□□ -0.63
SMAD9-203ENST00000399275 LRRC23Q53EV4 343 aaPredicted RBP11.08□□□□□ -0.63
SMAD9-203ENST00000399275 RBM27Q9P2N5 1060 aaKnown RBP11.08□□□□□ -0.63
SMAD9-203ENST00000399275 ARHGEF12Q9NZN5 1544 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 GCOM1H8Y6P7 765 aaPredicted RBP11.08□□□□□ -0.64
SMAD9-203ENST00000399275 MYZAPP0CAP1 466 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 MCM6Q14566 821 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 NGDNQ8NEJ9 315 aaKnown RBP11.08□□□□□ -0.64
SMAD9-203ENST00000399275 SCAND2PQ9GZW5 306 aaPredicted RBP11.08□□□□□ -0.64
SMAD9-203ENST00000399275 SEPT11Q9NVA2 429 aaKnown RBP11.08□□□□□ -0.64
SMAD9-203ENST00000399275 TRMT1Q9NXH9 659 aaKnown RBP11.08□□□□□ -0.64
SMAD9-203ENST00000399275 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.08□□□□□ -0.64
SMAD9-203ENST00000399275 CAVIN2O95810 425 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 SPECC1Q5M775 1068 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 GBP7Q8N8V2 638 aaPredicted RBP11.08□□□□□ -0.64
SMAD9-203ENST00000399275 PPP1R12CQ9BZL4 782 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 VCXQ9H320 206 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 SH2B1Q9NRF2 756 aaPredicted RBP11.08□□□□□ -0.64
SMAD9-203ENST00000399275 CCDC171Q6TFL3 1326 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 BUB1BO60566 1050 aaPredicted RBP11.08□□□□□ -0.64
SMAD9-203ENST00000399275 UBE2HP62256 183 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 UBE4AQ14139 1066 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 BRMS1Q9HCU9 246 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 VPS18Q9P253 973 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 NSD2O96028 1365 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 PIK3C2GO75747 1445 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 LAMC3Q9Y6N6 1575 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 SEC24BO95487 1268 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 SSBP05455 408 aaKnown RBP eCLIP11.08□□□□□ -0.64
SMAD9-203ENST00000399275 INPP5BP32019 993 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 NFE2L2Q16236 605 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 IRAK4Q9NWZ3 460 aa11.08□□□□□ -0.64
SMAD9-203ENST00000399275 SMTNL1A8MU46 457 aa11.07□□□□□ -0.64
SMAD9-203ENST00000399275 MORC4Q8TE76 937 aa11.07□□□□□ -0.64
SMAD9-203ENST00000399275 FSD1Q9BTV5 496 aa11.07□□□□□ -0.64
SMAD9-203ENST00000399275 TEFQ10587 303 aa11.07□□□□□ -0.64
SMAD9-203ENST00000399275 TRDNQ13061 729 aa11.07□□□□□ -0.64
SMAD9-203ENST00000399275 CLIP2Q9UDT6 1046 aa11.07□□□□□ -0.64
SMAD9-203ENST00000399275 RABGAP1Q9Y3P9 1069 aa11.07□□□□□ -0.64
SMAD9-203ENST00000399275 IFT140Q96RY7 1462 aa11.07□□□□□ -0.64
SMAD9-203ENST00000399275 BLMP54132 1417 aaPredicted RBP11.07□□□□□ -0.64
SMAD9-203ENST00000399275 SLC4A2P04920 1241 aa11.07□□□□□ -0.64
SMAD9-203ENST00000399275 EIF2S2P20042 333 aaKnown RBP11.07□□□□□ -0.64
SMAD9-203ENST00000399275 VEZTQ9HBM0 779 aa11.07□□□□□ -0.64
SMAD9-203ENST00000399275 EPS15P42566 896 aa11.07□□□□□ -0.64
SMAD9-203ENST00000399275 SAFBQ15424 915 aaKnown RBP eCLIP11.07□□□□□ -0.64
SMAD9-203ENST00000399275 TTC22Q5TAA0 569 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms