RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 CCND3P30281 292 aaPredicted RBP4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 PRKAR2BP31323 418 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 MNDAP41218 407 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 NPBWR1P48145 328 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 PTENP60484 403 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 MRPS21P82921 87 aaKnown RBP4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 RELQ04864 619 aaPredicted RBP4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 SNTA1Q13424 505 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 VEZF1Q14119 521 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 TTC31Q49AM3 519 aaPredicted RBP4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 PLXDC2Q6UX71 529 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 ZNF517Q6ZMY9 492 aaPredicted RBP4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 ZNF575Q86XF7 245 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 IQCF1Q8N6M8 205 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 THAP8Q8NA92 274 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 UXS1Q8NBZ7 420 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 NCOA7Q8NI08 942 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 SEPT1Q8WYJ6 367 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 SNRNP40Q96DI7 357 aaKnown RBP4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 LINGO1Q96FE5 620 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 THOC1Q96FV9 657 aaKnown RBP4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 BICD1Q96G01 975 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 PDLIM5Q96HC4 596 aaKnown RBP4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 COG3Q96JB2 828 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 ATP6V0BQ99437 205 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 SLC29A3Q9BZD2 475 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 LSG1Q9H089 658 aaKnown RBP4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 Q9N2K0 584 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 TCF7L2Q9NQB0 619 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 COMMD8Q9NX08 183 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 OCIAD1Q9NX40 245 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 LRWD1Q9UFC0 647 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 PLEKHG1Q9ULL1 1385 aa4.47□□□□□ -1.69
HMGB3P18-201ENST00000406327 ACEP12821 1306 aa4.46□□□□□ -1.69
HMGB3P18-201ENST00000406327 ADAMTS13Q76LX8 1427 aa4.46□□□□□ -1.69
HMGB3P18-201ENST00000406327 CKAP5Q14008 2032 aa4.46□□□□□ -1.69
HMGB3P18-201ENST00000406327 CLTCQ00610 1675 aaKnown RBP4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 GTPBP10A4D1E9 387 aaKnown RBP4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 CD8B2A6NJW9 211 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 HNRNPCL2B2RXH8 293 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 SLC16A8O95907 504 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 ITGA2P17301 1181 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 CTNNB1P35222 781 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 IER3P46695 156 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 CDX1P47902 265 aaPredicted RBP4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 NT5C2P49902 561 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 KIAA1024LP59773 190 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 PRKAA1Q13131 559 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 CBX3Q13185 183 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 PTGISQ16647 500 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 PHKG1Q16816 387 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 ODF4Q2M2E3 257 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 FAM171BQ6P995 826 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 ZNF549Q6P9A3 640 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 SLC27A1Q6PCB7 646 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 KCTD9Q7L273 389 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 EXOC3L1Q86VI1 746 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 NOA1Q8NC60 698 aaKnown RBP4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 NPEPL1Q8NDH3 523 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 LPCAT1Q8NF37 534 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 DBF4BQ8NFT6 615 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 RTP4Q96DX8 246 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 KLHL5Q96PQ7 755 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 RAD9AQ99638 391 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 TMEM204Q9BSN7 226 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 ARRDC1-AS1Q9H2J1 176 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 SRD5A3Q9H8P0 318 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 AKIRIN1Q9H9L7 192 aaPredicted RBP4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 RNPEPL1Q9HAU8 725 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 APOBEC3GQ9HC16 384 aaKnown RBP4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 ODF2LQ9ULJ1 636 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 KCNS2Q9ULS6 477 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 STX8Q9UNK0 236 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 TNNQ9UQP3 1299 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 TTC21BQ7Z4L5 1316 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 PCDH11YQ9BZA8 1340 aa4.46□□□□□ -1.7
HMGB3P18-201ENST00000406327 TAF1P21675 1872 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 SHPRHQ149N8 1683 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 TEX13DA0A0J9YY54 714 aaPredicted RBP4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 CLEC18AA5D8T8 446 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 FAM149AA5PLN7 773 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 PLOD2O00469 737 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 ST8SIA3O43173 380 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 SYNGR3O43761 229 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 SNX3O60493 162 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 PLGP00747 810 aaPredicted RBP4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 HMOX1P09601 288 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 ZNF853P0CG23 659 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 HSPA8P11142 646 aaKnown RBP4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 CDH1P12830 882 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 HOXA1P49639 335 aaPredicted RBP4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 GMPSP49915 693 aaPredicted RBP4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 ZNF81P51508 661 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 SULT2A1Q06520 285 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 NPRL3Q12980 569 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 RBBP7Q16576 425 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 CA9Q16790 459 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 IQCCQ4KMZ1 466 aa4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 LACTB2Q53H82 288 aaPredicted RBP4.45□□□□□ -1.7
HMGB3P18-201ENST00000406327 ETFRF1Q6IPR1 90 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms