RNA–Protein interactions for RNA: ENST00000406327.2

HMGB3P18-201, Transcript of high mobility group box 3 pseudogene 18, humanhuman

BASIC

Gene HMGB3P18, Length 590 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P18-201ENST00000406327 AEBP2Q6ZN18 517 aaPredicted RBP22.09■■□□□ 1.13
HMGB3P18-201ENST00000406327 CHIC1Q5VXU3 224 aa20.72■□□□□ 0.91
HMGB3P18-201ENST00000406327 SENP3Q9H4L4 574 aaPredicted RBP18.98■□□□□ 0.63
HMGB3P18-201ENST00000406327 PHF23Q9BUL5 403 aaPredicted RBP18.65■□□□□ 0.58
HMGB3P18-201ENST00000406327 FOXD1Q16676 465 aa17.71■□□□□ 0.43
HMGB3P18-201ENST00000406327 POTEDQ86YR6 584 aa17.08■□□□□ 0.32
HMGB3P18-201ENST00000406327 MSH5O43196 834 aa16.79■□□□□ 0.28
HMGB3P18-201ENST00000406327 PIAS4Q8N2W9 510 aaPredicted RBP16.47■□□□□ 0.23
HMGB3P18-201ENST00000406327 PLPPR3Q6T4P5 718 aa16.3■□□□□ 0.2
HMGB3P18-201ENST00000406327 PPP6R1Q9UPN7 881 aa16.2■□□□□ 0.18
HMGB3P18-201ENST00000406327 ADRA2BP18089 450 aa16.13■□□□□ 0.17
HMGB3P18-201ENST00000406327 DMRT2Q9Y5R5 561 aa14.97□□□□□ -0.01
HMGB3P18-201ENST00000406327 MAPK8IP2Q13387 824 aaPredicted RBP14.94□□□□□ -0.02
HMGB3P18-201ENST00000406327 SCAF1Q9H7N4 1312 aaKnown RBP14.84□□□□□ -0.03
HMGB3P18-201ENST00000406327 CACNB1Q02641 598 aaPredicted RBP14.65□□□□□ -0.06
HMGB3P18-201ENST00000406327 DCAF8L1A6NGE4 600 aa14.39□□□□□ -0.11
HMGB3P18-201ENST00000406327 HOXD11P31277 338 aaPredicted RBP14.25□□□□□ -0.13
HMGB3P18-201ENST00000406327 RNF39Q9H2S5 420 aa14.25□□□□□ -0.13
HMGB3P18-201ENST00000406327 PPP4R3CPQ6ZMV5 832 aa14.21□□□□□ -0.13
HMGB3P18-201ENST00000406327 CNKSR2Q8WXI2 1034 aa14.06□□□□□ -0.16
HMGB3P18-201ENST00000406327 C1QBPQ07021 282 aaKnown RBP14.05□□□□□ -0.16
HMGB3P18-201ENST00000406327 RNF216Q9NWF9 866 aaPredicted RBP14.04□□□□□ -0.16
HMGB3P18-201ENST00000406327 KCNA4P22459 653 aa13.97□□□□□ -0.17
HMGB3P18-201ENST00000406327 DNAJC5BQ9UF47 199 aa13.88□□□□□ -0.19
HMGB3P18-201ENST00000406327 EHMT2Q96KQ7 1210 aa13.69□□□□□ -0.22
HMGB3P18-201ENST00000406327 NCBP3Q53F19 620 aaKnown RBP13.63□□□□□ -0.23
HMGB3P18-201ENST00000406327 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.59□□□□□ -0.23
HMGB3P18-201ENST00000406327 SLC4A1APQ9BWU0 796 aaKnown RBP13.48□□□□□ -0.25
HMGB3P18-201ENST00000406327 NPM3O75607 178 aaKnown RBP13.33□□□□□ -0.28
HMGB3P18-201ENST00000406327 POTEHQ6S545 545 aa13.31□□□□□ -0.28
HMGB3P18-201ENST00000406327 CSRNP3Q8WYN3 585 aa13.24□□□□□ -0.29
HMGB3P18-201ENST00000406327 U3KPZ7 1027 aaPredicted RBP13.23□□□□□ -0.29
HMGB3P18-201ENST00000406327 DSG3P32926 999 aa13.2□□□□□ -0.3
HMGB3P18-201ENST00000406327 CAPN15O75808 1086 aa13.19□□□□□ -0.3
HMGB3P18-201ENST00000406327 SPINK5Q9NQ38 1064 aaPredicted RBP13.16□□□□□ -0.3
HMGB3P18-201ENST00000406327 APLP2Q06481 763 aa12.89□□□□□ -0.35
HMGB3P18-201ENST00000406327 TRHP20396 242 aaPredicted RBP12.87□□□□□ -0.35
HMGB3P18-201ENST00000406327 ZNF219Q9P2Y4 722 aaPredicted RBP12.85□□□□□ -0.35
HMGB3P18-201ENST00000406327 ABCB7O75027 752 aa12.82□□□□□ -0.36
HMGB3P18-201ENST00000406327 SLC4A2P04920 1241 aa12.82□□□□□ -0.36
HMGB3P18-201ENST00000406327 ZBTB22O15209 634 aa12.8□□□□□ -0.36
HMGB3P18-201ENST00000406327 FOXD4L1Q9NU39 408 aa12.8□□□□□ -0.36
HMGB3P18-201ENST00000406327 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.77□□□□□ -0.37
HMGB3P18-201ENST00000406327 HNRNPUL2Q1KMD3 747 aaKnown RBP12.77□□□□□ -0.37
HMGB3P18-201ENST00000406327 SAMD1Q6SPF0 538 aaPredicted RBP12.66□□□□□ -0.38
HMGB3P18-201ENST00000406327 RBM42Q9BTD8 480 aaKnown RBP12.66□□□□□ -0.38
HMGB3P18-201ENST00000406327 CHRDL2Q6WN34 429 aa12.51□□□□□ -0.41
HMGB3P18-201ENST00000406327 POLA2Q14181 598 aa12.43□□□□□ -0.42
HMGB3P18-201ENST00000406327 MYCNP04198 464 aaPredicted RBP12.36□□□□□ -0.43
HMGB3P18-201ENST00000406327 ATXN8OSP0DMR3 200 aa12.35□□□□□ -0.43
HMGB3P18-201ENST00000406327 SP7Q8TDD2 431 aaPredicted RBP12.28□□□□□ -0.44
HMGB3P18-201ENST00000406327 AKT1S1Q96B36 256 aa12.25□□□□□ -0.45
HMGB3P18-201ENST00000406327 ZBTB12Q9Y330 459 aaPredicted RBP12.18□□□□□ -0.46
HMGB3P18-201ENST00000406327 REM2Q8IYK8 340 aaPredicted RBP12.12□□□□□ -0.47
HMGB3P18-201ENST00000406327 PIP4P2Q8N4L2 257 aa12.11□□□□□ -0.47
HMGB3P18-201ENST00000406327 ATF5Q9Y2D1 282 aaPredicted RBP12.06□□□□□ -0.48
HMGB3P18-201ENST00000406327 OSCARQ8IYS5 282 aa12.04□□□□□ -0.48
HMGB3P18-201ENST00000406327 HAX1O00165 279 aa12.03□□□□□ -0.48
HMGB3P18-201ENST00000406327 AMER1Q5JTC6 1135 aaPredicted RBP12.02□□□□□ -0.49
HMGB3P18-201ENST00000406327 PITPNM1O00562 1244 aa11.99□□□□□ -0.49
HMGB3P18-201ENST00000406327 FKBP8Q14318 412 aa11.99□□□□□ -0.49
HMGB3P18-201ENST00000406327 FXR2P51116 673 aaKnown RBP eCLIP11.98□□□□□ -0.49
HMGB3P18-201ENST00000406327 RTN4Q9NQC3 1192 aaKnown RBP11.85□□□□□ -0.51
HMGB3P18-201ENST00000406327 EVX2Q03828 476 aa11.79□□□□□ -0.52
HMGB3P18-201ENST00000406327 SPDYE2BA6NHP3 402 aa11.74□□□□□ -0.53
HMGB3P18-201ENST00000406327 SPDYE6P0CI01 402 aa11.74□□□□□ -0.53
HMGB3P18-201ENST00000406327 SPDYE2Q495Y8 402 aa11.74□□□□□ -0.53
HMGB3P18-201ENST00000406327 SLC24A1O60721 1099 aa11.72□□□□□ -0.53
HMGB3P18-201ENST00000406327 PRKAR2AP13861 404 aaKnown RBP11.69□□□□□ -0.54
HMGB3P18-201ENST00000406327 FBLN2P98095 1184 aa11.69□□□□□ -0.54
HMGB3P18-201ENST00000406327 SPDYE1Q8NFV5 336 aaPredicted RBP11.66□□□□□ -0.54
HMGB3P18-201ENST00000406327 CLEC11AQ9Y240 323 aa11.65□□□□□ -0.54
HMGB3P18-201ENST00000406327 C19orf67A6NJJ6 358 aa11.61□□□□□ -0.55
HMGB3P18-201ENST00000406327 GABBR2O75899 941 aa11.54□□□□□ -0.56
HMGB3P18-201ENST00000406327 ZNF692Q9BU19 519 aaPredicted RBP11.54□□□□□ -0.56
HMGB3P18-201ENST00000406327 FBXO3Q9UK99 471 aa11.54□□□□□ -0.56
HMGB3P18-201ENST00000406327 LHX8Q68G74 356 aa11.52□□□□□ -0.57
HMGB3P18-201ENST00000406327 SSUH2Q9Y2M2 353 aa11.52□□□□□ -0.57
HMGB3P18-201ENST00000406327 MKRN4PQ13434 485 aaPredicted RBP11.49□□□□□ -0.57
HMGB3P18-201ENST00000406327 SPDYE4A6NLX3 237 aa11.48□□□□□ -0.57
HMGB3P18-201ENST00000406327 CHADLQ6NUI6 762 aa11.43□□□□□ -0.58
HMGB3P18-201ENST00000406327 PRR29P0C7W0 189 aa11.4□□□□□ -0.58
HMGB3P18-201ENST00000406327 PROM2Q8N271 834 aa11.34□□□□□ -0.59
HMGB3P18-201ENST00000406327 PABPN1Q86U42 306 aaKnown RBP eCLIP11.33□□□□□ -0.6
HMGB3P18-201ENST00000406327 CD44P16070 742 aaKnown RBP11.29□□□□□ -0.6
HMGB3P18-201ENST00000406327 CLCN6P51797 869 aa11.28□□□□□ -0.6
HMGB3P18-201ENST00000406327 VASPP50552 380 aaPredicted RBP11.27□□□□□ -0.61
HMGB3P18-201ENST00000406327 POTEIP0CG38 1075 aa11.26□□□□□ -0.61
HMGB3P18-201ENST00000406327 FARP1Q9Y4F1 1045 aaPredicted RBP11.25□□□□□ -0.61
HMGB3P18-201ENST00000406327 DCBLD2Q96PD2 775 aa11.17□□□□□ -0.62
HMGB3P18-201ENST00000406327 PLSCR2Q9NRY7 297 aa11.13□□□□□ -0.63
HMGB3P18-201ENST00000406327 ZNF579Q8NAF0 562 aaKnown RBP11.1□□□□□ -0.63
HMGB3P18-201ENST00000406327 IFNLR1Q8IU57 520 aaPredicted RBP11.09□□□□□ -0.63
HMGB3P18-201ENST00000406327 ZRANB1Q9UGI0 708 aa11.07□□□□□ -0.64
HMGB3P18-201ENST00000406327 STAG3Q9UJ98 1225 aa11.04□□□□□ -0.64
HMGB3P18-201ENST00000406327 PLCB2Q00722 1185 aa11.02□□□□□ -0.65
HMGB3P18-201ENST00000406327 DCAF8L2P0C7V8 631 aa11.01□□□□□ -0.65
HMGB3P18-201ENST00000406327 GALR2O43603 387 aaPredicted RBP10.98□□□□□ -0.65
HMGB3P18-201ENST00000406327 KLHL34Q8N239 644 aa10.98□□□□□ -0.65
HMGB3P18-201ENST00000406327 CREBZFQ9NS37 354 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms