RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ABCG2Q9UNQ0 655 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 PCDHGA8Q9Y5G5 932 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 ARHGEF33A8MVX0 844 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 CREG1O75629 220 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 FTH1P02794 183 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 LAMP1P11279 417 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 CDK4P11802 303 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 SYN1P17600 705 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 LAG3P18627 525 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 MSH3P20585 1137 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 PTGER1P34995 402 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 TMED1Q13445 227 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 RAB39AQ14964 217 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 SYTL3Q4VX76 610 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 Q6ZPB1 254 aaPredicted RBP16.43■□□□□ 0.22
USP28-208ENST00000540438 MMP21Q8N119 569 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 ELMOD1Q8N336 334 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 SDCCAG3Q96C92 435 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 SORBS1Q9BX66 1292 aaKnown RBP16.43■□□□□ 0.22
USP28-208ENST00000540438 AMBRA1Q9C0C7 1298 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 TDP1Q9NUW8 608 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 SH3BP4Q9P0V3 963 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 SLC8A2Q9UPR5 921 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 PCDHB3Q9Y5E6 796 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 CDH1P12830 882 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 ENTPD1P49961 510 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 MC1RQ01726 317 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 CATSPEREQ5SY80 951 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 INTS11Q5TA45 600 aaKnown RBP16.43■□□□□ 0.22
USP28-208ENST00000540438 ANKRD33Q7Z3H0 272 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 SPRED1Q7Z699 444 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 RIMKLAQ8IXN7 391 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 IRF7Q92985 503 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 ISOC1Q96CN7 298 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 HERC2P3Q9BVR0 1158 aa16.43■□□□□ 0.22
USP28-208ENST00000540438 MAGEB17A8MXT2 336 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 POP4O95707 220 aaKnown RBP16.42■□□□□ 0.22
USP28-208ENST00000540438 EBLN1P0CF75 366 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 MYF6P23409 242 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 BNIP3Q12983 259 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 KCNAB2Q13303 367 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 ABRAXAS1Q6UWZ7 409 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 TMC5Q6UXY8 1006 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 R3HCC1LQ7Z5L2 792 aaKnown RBP16.42■□□□□ 0.22
USP28-208ENST00000540438 RASGEF1AQ8N9B8 481 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 ZNF740Q8NDX6 193 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 OR5AK3PQ8NH89 298 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 ASB11Q8WXH4 323 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 DUS3LQ96G46 650 aaKnown RBP16.42■□□□□ 0.22
USP28-208ENST00000540438 NPLQ9BXD5 320 aaPredicted RBP16.42■□□□□ 0.22
USP28-208ENST00000540438 AMBNQ9NP70 447 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 RASSF1Q9NS23 344 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 WARS2Q9UGM6 360 aaKnown RBP16.42■□□□□ 0.22
USP28-208ENST00000540438 RAPGEFL1Q9UHV5 662 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 OGDHLQ9ULD0 1010 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 OTOL1A6NHN0 477 aaPredicted RBP16.42■□□□□ 0.22
USP28-208ENST00000540438 DEAF1O75398 565 aaPredicted RBP16.42■□□□□ 0.22
USP28-208ENST00000540438 ARHGEF15O94989 841 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 COX7A2P14406 83 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 ZNF182P17025 639 aaPredicted RBP16.42■□□□□ 0.22
USP28-208ENST00000540438 FUT4P22083 530 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 MTA1Q13330 715 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 SMN1Q16637 294 aaKnown RBP16.42■□□□□ 0.22
USP28-208ENST00000540438 TMEM220Q6QAJ8 160 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 SYTL1Q8IYJ3 562 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 CFAP206Q8IYR0 622 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 BPIFB1Q8TDL5 484 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 HHIPL1Q96JK4 782 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 PAIP1Q9H074 479 aaKnown RBP16.42■□□□□ 0.22
USP28-208ENST00000540438 ZBP1Q9H171 429 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 RIBC2Q9H4K1 309 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 CLMPQ9H6B4 373 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 SERHLQ9NQF3 203 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 PTTG2Q9NZH5 202 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 MAGEL2Q9UJ55 1249 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 ACSL6Q9UKU0 697 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 TDRKHQ9Y2W6 561 aaKnown RBP16.42■□□□□ 0.22
USP28-208ENST00000540438 CCDC88CQ9P219 2028 aa16.42■□□□□ 0.22
USP28-208ENST00000540438 SCN8AQ9UQD0 1980 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 LATO43561 262 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 RAP2AP10114 183 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 THRBP10828 461 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 MATN1P21941 496 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 RPS3P23396 243 aaKnown RBP eCLIP16.41■□□□□ 0.22
USP28-208ENST00000540438 FMO3P31513 532 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 SLC6A11P48066 632 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 PFN3P60673 137 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 DOC2AQ14183 400 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 NOXRED1Q6NXP6 359 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 ZNF783Q6ZMS7 281 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 CEP68Q76N32 757 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 TMPRSS11BQ86T26 416 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 TRAPPC5Q8IUR0 188 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 OR52J3Q8NH60 311 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 GNG14A0A1W2PPG7 69 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 GRXCR1A8MXD5 290 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 SLC28A1O00337 649 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 SOCS5O75159 536 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 TGFB1P01137 390 aa16.41■□□□□ 0.22
USP28-208ENST00000540438 ENGP17813 658 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms