RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 RHBDF1Q96CC6 855 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 OPTNQ96CV9 577 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 RADILQ96JH8 1075 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 SLF1Q9BQI6 1058 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 NEURL2Q9BR09 285 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 ADPGKQ9BRR6 497 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 MRPL9Q9BYD2 267 aaKnown RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 LRRCC1Q9C099 1032 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 CSTL1Q9H114 145 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 BOLA2Q9H3K6 86 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 UPF2Q9HAU5 1272 aaKnown RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 SEBOXQ9HB31 216 aaPredicted RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 AATFQ9NY61 560 aaKnown RBP eCLIP3.33□□□□□ -1.88
USP48-215ENST00000534705 CWC15Q9P013 229 aaKnown RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 LIMA1Q9UHB6 759 aaKnown RBP3.33□□□□□ -1.88
USP48-215ENST00000534705 PADI3Q9ULW8 664 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 SNX5Q9Y5X3 404 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 FLT1P17948 1338 aa3.33□□□□□ -1.88
USP48-215ENST00000534705 MYH9P35579 1960 aaKnown RBP3.32□□□□□ -1.88
USP48-215ENST00000534705 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 GTPBP10A4D1E9 387 aaKnown RBP3.32□□□□□ -1.88
USP48-215ENST00000534705 C16orf97H3BN30 126 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 M0QZ24 198 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 HS3ST1O14792 307 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 SCAMP1O15126 338 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 CTAGE5O15320 804 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 KCNN4O15554 427 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 XPNPEP2O43895 674 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 FGF17O60258 216 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 WDR1O75083 606 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 NDUFS3O75489 264 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 IDH1O75874 414 aaKnown RBP3.32□□□□□ -1.88
USP48-215ENST00000534705 TSPAN9O75954 239 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 NKX2-2O95096 273 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 MBD3O95983 291 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 SP1P08047 785 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 FAM106CPP0CH98 169 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 GLULP15104 373 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 ZNF23P17027 643 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 UGT1A1P22309 533 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 KCNA5P22460 613 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 RGS2P41220 211 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 PIK3CAP42336 1068 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 SSR1P43307 286 aaKnown RBP3.32□□□□□ -1.88
USP48-215ENST00000534705 GSTO1P78417 241 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 NUCB2P80303 420 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 TFAP4Q01664 338 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 GABPAQ06546 454 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 NIPAL4Q0D2K0 466 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 CDC16Q13042 620 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 GTF2H2Q13888 395 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 TBCEQ15813 527 aaPredicted RBP3.32□□□□□ -1.88
USP48-215ENST00000534705 CCDC6Q16204 474 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 CCNYL2Q5T2Q4 361 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 STPG1Q5TH74 334 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 IRAK1BP1Q5VVH5 260 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 TTI2Q6NXR4 508 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 GTF2H2CQ6P1K8 395 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 NCEH1Q6PIU2 408 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 SYT10Q6XYQ8 523 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 CCDC91Q7Z6B0 441 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 VSIG1Q86XK7 387 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 ERO1BQ86YB8 467 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 HSCBQ8IWL3 235 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 ARHGAP12Q8IWW6 846 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 TEX11Q8IYF3 940 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 SCYL3Q8IZE3 742 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 SRBD1Q8N5C6 995 aaKnown RBP3.32□□□□□ -1.88
USP48-215ENST00000534705 KBTBD3Q8NAB2 608 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 MSANTD4Q8NCY6 345 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 OR5R1Q8NH85 324 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 BBS10Q8TAM1 723 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 EPYCQ99645 322 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 CMKLR1Q99788 373 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 SLX1AQ9BQ83 275 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 FUCA2Q9BTY2 467 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 ZSCAN16Q9H4T2 348 aaPredicted RBP3.32□□□□□ -1.88
USP48-215ENST00000534705 PDZD7Q9H5P4 517 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 SYNCQ9H7C4 482 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 SLC28A3Q9HAS3 691 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 ZCCHC17Q9NP64 241 aaKnown RBP3.32□□□□□ -1.88
USP48-215ENST00000534705 MRGBPQ9NV56 204 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 PAG1Q9NWQ8 432 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 TMOD2Q9NZR1 351 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 GIMAP2Q9UG22 337 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 LCMT1Q9UIC8 334 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 FBXW11Q9UKB1 542 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 RALYQ9UKM9 306 aaKnown RBP3.32□□□□□ -1.88
USP48-215ENST00000534705 ZNF711Q9Y462 761 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 TMEM184BQ9Y519 407 aaPredicted RBP3.32□□□□□ -1.88
USP48-215ENST00000534705 KCNE2Q9Y6J6 123 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 DDX49Q9Y6V7 483 aaKnown RBP3.32□□□□□ -1.88
USP48-215ENST00000534705 V9GYY5 206 aaPredicted RBP3.32□□□□□ -1.88
USP48-215ENST00000534705 TTC41PQ6P2S7 1318 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 ZNF532Q9HCE3 1301 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 TCHHQ07283 1943 aa3.32□□□□□ -1.88
USP48-215ENST00000534705 PTPRSQ13332 1948 aa3.31□□□□□ -1.88
USP48-215ENST00000534705 ROBO3Q96MS0 1386 aa3.31□□□□□ -1.88
USP48-215ENST00000534705 CCL15-CCL14A0A0B4J2E2 113 aa3.31□□□□□ -1.88
USP48-215ENST00000534705 CTAGE9A4FU28 777 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms