RNA–Protein interactions for RNA: ENSMUST00000213114.1

Ldlr-202, Transcript of Low-density lipoprotein receptor, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Ldlr, Length 4,318 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ldlr-202ENSMUST00000213114 KdrP35918 1367 aa11.24□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Rasa1E9PYG6 1038 aa11.24□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Pdia3P27773 505 aaKnown RBP11.24□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Mbd5B1AYB6 1498 aa11.24□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Gm21969J3QJZ1 289 aa11.23□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Ccp110Q7TSH4 1004 aa11.23□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Irgm2A0A140LIF8 407 aa11.23□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Paxip1Q6NZQ4 1056 aa11.23□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Sugp2Q8CH09 1067 aa11.23□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Rrs1Q9CYH6 365 aaKnown RBP11.23□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Il1rapl2Q9ERS6 686 aa11.23□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Cul7Q8VE73 1689 aa11.23□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Kdm5cP41230 1554 aa11.23□□□□□ -0.61
Ldlr-202ENSMUST00000213114 PdcQ9QW08 244 aa11.23□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Nsd3Q6P2L6 1439 aa11.23□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Evc2Q8K1G2 1220 aa11.23□□□□□ -0.61
Ldlr-202ENSMUST00000213114 CenppQ9CZ92 286 aa11.23□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Samm50Q8BGH2 469 aa11.22□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Trim34aQ99PP6 485 aa11.22□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Echdc1Q9D9V3 322 aa11.22□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Usp54Q8BL06 1588 aaKnown RBP11.22□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Aldh8a1Q8BH00 487 aa11.22□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Zeb2Q9R0G7 1215 aa11.22□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Wdr78E9PYY5 807 aa11.22□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Soga3Q6NZL0 945 aa11.22□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Dnajc10Q9DC23 793 aa11.22□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Lamc1P02468 1607 aaKnown RBP11.22□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Hfm1D3Z4R1 1434 aa11.22□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Cdc42bpaQ3UU96 1719 aa11.22□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Irf9Q61179 399 aa11.21□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Agtpbp1Q641K1 1218 aa11.21□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Krt82Q99M74 516 aa11.21□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Rapgef4Q9EQZ6 1011 aa11.21□□□□□ -0.61
Ldlr-202ENSMUST00000213114 Tpm2P58774 284 aa11.21□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Nucb1Q02819 459 aaKnown RBP11.21□□□□□ -0.62
Ldlr-202ENSMUST00000213114 OptnQ8K3K8 584 aa11.21□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Bag3Q9JLV1 577 aaKnown RBP11.21□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Efcab6Q6P1E8 1516 aa11.21□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Fsd1Q7TPM6 496 aa11.21□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Fez1Q8K0X8 392 aa11.21□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Ubxn4Q8VCH8 506 aa11.21□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Cep57l1Q8VDS7 400 aa11.21□□□□□ -0.62
Ldlr-202ENSMUST00000213114 NpatQ8BMA5 1420 aa11.2□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Synj2Q9D2G5 1434 aa11.2□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Strn4P58404 760 aa11.2□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Atp8b2P98199 1209 aa11.2□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Rbm28Q8CGC6 750 aaKnown RBP11.2□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Klf15Q9EPW2 415 aa11.2□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Hmgn5Q9JL35 406 aa11.2□□□□□ -0.62
Ldlr-202ENSMUST00000213114 ScaperF8VQ70 1398 aaKnown RBP11.2□□□□□ -0.62
Ldlr-202ENSMUST00000213114 EzrP26040 586 aaKnown RBP11.2□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Washc4Q3UMB9 1173 aa11.2□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Mapk8ip1Q9WVI9 707 aa11.2□□□□□ -0.62
Ldlr-202ENSMUST00000213114 P2rx7Q9Z1M0 595 aa11.2□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Ltv1Q6NSQ7 470 aaKnown RBP11.2□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Dmrt2Q8BG36 561 aa11.2□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Odf2lQ9D478 642 aa11.2□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Tulp4Q9JIL5 1547 aa11.19□□□□□ -0.62
Ldlr-202ENSMUST00000213114 TnmdQ9EP64 317 aa11.19□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Zbtb22Q9Z0G7 638 aa11.19□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Bicdl1A0JNT9 577 aa11.19□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Trim34bJ3QNR8 485 aa11.19□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Gabpb2P81069 414 aa11.19□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Krt85Q9Z2T6 507 aa11.19□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Mum1Q6DID5 682 aa11.19□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Gimap5Q8BWF2 308 aa11.19□□□□□ -0.62
Ldlr-202ENSMUST00000213114 NgdnQ9DB96 315 aaKnown RBP11.19□□□□□ -0.62
Ldlr-202ENSMUST00000213114 NhsB1AV60 1647 aa11.19□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Rnf17Q99MV7 1640 aa11.19□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Elp1Q7TT37 1333 aaKnown RBP11.19□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Mctp1E9PV86 951 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Gsdma2Q32M21 443 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Tubb6Q922F4 447 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Kif1bQ60575 1816 aaKnown RBP11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Mcm3P25206 812 aaKnown RBP11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Pa2g4P50580 394 aaKnown RBP11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Idi1P58044 227 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Jarid2Q62315 1234 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Spty2d1Q68FG3 682 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Ppp6r1Q7TSI3 856 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Stk38Q91VJ4 465 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 ImpactO55091 318 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Nup88Q8CEC0 753 aaKnown RBP11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Aldh1l2Q8K009 923 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Tceanc2Q8R2M0 207 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Nlgn1Q99K10 843 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Rbm10Q99KG3 930 aaKnown RBP11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Astn2Q80Z10 1352 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Col17a1Q07563 1470 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Mcmdc2E9Q956 681 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Dnajc2P54103 621 aaKnown RBP11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Trim28Q62318 834 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Vps53Q8CCB4 832 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Polr3dQ91WD1 398 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Erc1Q99MI1 1120 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Amotl1Q9D4H4 968 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Slx4ipQ9D7Y9 413 aa11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 LlphQ9D945 130 aaKnown RBP11.18□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Gtf2f1Q3THK3 508 aaKnown RBP11.17□□□□□ -0.62
Ldlr-202ENSMUST00000213114 Ell2Q3UKU1 639 aa11.17□□□□□ -0.62
Retrieved 100 of 22,080 RNA–protein pairs in 20.2 ms