Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 AC073195.1-201ENST00000607241 877 ntBASIC16.79■□□□□ 0.28
VSX1Q9NZR4 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 ADK-206ENST00000541550 2222 ntTSL 2 BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 KRT8P32-201ENST00000512863 1461 ntBASIC16.79■□□□□ 0.28
VSX1Q9NZR4 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 AC104581.1-202ENST00000635932 2618 ntBASIC16.79■□□□□ 0.28
VSX1Q9NZR4 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 CR392000.1-201ENST00000624770 1228 ntBASIC16.78■□□□□ 0.28
VSX1Q9NZR4 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VSX1Q9NZR4 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 MTMR9LP-203ENST00000426597 1545 ntBASIC16.77■□□□□ 0.28
VSX1Q9NZR4 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 DENND3-207ENST00000518347 850 ntTSL 2 BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 TK2-204ENST00000525974 1178 ntTSL 2 BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
VSX1Q9NZR4 AC011298.2-201ENST00000617989 482 ntBASIC16.77■□□□□ 0.28
VSX1Q9NZR4 AC130371.2-201ENST00000619443 611 ntBASIC16.77■□□□□ 0.28
VSX1Q9NZR4 AL359736.2-201ENST00000621992 437 ntBASIC16.77■□□□□ 0.28
VSX1Q9NZR4 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.77■□□□□ 0.27
VSX1Q9NZR4 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VSX1Q9NZR4 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.77■□□□□ 0.27
VSX1Q9NZR4 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC16.77■□□□□ 0.27
VSX1Q9NZR4 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC16.77■□□□□ 0.27
VSX1Q9NZR4 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.77■□□□□ 0.27
VSX1Q9NZR4 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.77■□□□□ 0.27
VSX1Q9NZR4 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC16.77■□□□□ 0.27
VSX1Q9NZR4 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.76■□□□□ 0.27
VSX1Q9NZR4 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 FAM201B-201ENST00000458407 597 ntBASIC16.76■□□□□ 0.27
VSX1Q9NZR4 AC008040.2-201ENST00000461049 708 ntBASIC16.76■□□□□ 0.27
VSX1Q9NZR4 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 CKBP1-201ENST00000565489 1086 ntBASIC16.76■□□□□ 0.27
VSX1Q9NZR4 RPS15-203ENST00000586096 570 ntTSL 2 BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 ITM2C-210ENST00000620962 501 ntBASIC16.76■□□□□ 0.27
VSX1Q9NZR4 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VSX1Q9NZR4 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms