Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCX3AQ9NNX9 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
VCX3AQ9NNX9 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 PHGDH-210ENST00000641115 1638 ntBASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 AC097381.1-201ENST00000429019 1296 ntBASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 AC138907.5-202ENST00000569484 235 ntBASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 AC068418.2-201ENST00000577309 3703 ntBASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 KRT8P20-201ENST00000423953 1409 ntBASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCX3AQ9NNX9 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 AC105265.2-201ENST00000467189 838 ntBASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCX3AQ9NNX9 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 CREM-229ENST00000474362 1030 ntTSL 2 BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms