Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 SPDYE13P-201ENST00000445314 798 ntBASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
TM9SF3Q9HD45 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TM9SF3Q9HD45 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.77■□□□□ 0.59
TM9SF3Q9HD45 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.76■□□□□ 0.59
TM9SF3Q9HD45 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 HBZP1-201ENST00000354915 429 ntBASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 GPAT2P1-201ENST00000444924 1672 ntBASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 AP000974.1-201ENST00000623909 2387 ntBASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.75■□□□□ 0.59
TM9SF3Q9HD45 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 SDHAP1-207ENST00000440850 2000 ntBASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 ATP5G2P1-201ENST00000433580 426 ntBASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 TPM4P1-201ENST00000436100 807 ntBASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 RASA4DP-201ENST00000460726 1199 ntBASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.74■□□□□ 0.59
TM9SF3Q9HD45 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms