Protein–RNA interactions for Protein: Q9BSQ5

CCM2, Cerebral cavernous malformations 2 protein, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2Q9BSQ5 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 HEIH-201ENST00000623091 1652 ntBASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 MCCD1P1-208ENST00000445732 328 ntBASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 MIR4674-201ENST00000582457 87 ntBASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 FAM87A-204ENST00000613235 858 ntBASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.48■□□□□ 0.55
CCM2Q9BSQ5 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 AL109659.2-201ENST00000606809 1674 ntBASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 SLC25A3P1-201ENST00000443844 931 ntBASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
CCM2Q9BSQ5 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CCM2Q9BSQ5 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 AC113347.1-201ENST00000413321 391 ntBASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 LIN28AP1-201ENST00000429574 405 ntBASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.45■□□□□ 0.54
CCM2Q9BSQ5 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms