Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 ANO7L1-203ENST00000602586 1720 ntBASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRIM56Q9BRZ2 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 AC006058.3-201ENST00000606217 1069 ntBASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRIM56Q9BRZ2 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 RN7SL471P-201ENST00000580476 299 ntBASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 AC090164.3-201ENST00000610780 2143 ntBASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
TRIM56Q9BRZ2 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
TRIM56Q9BRZ2 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
TRIM56Q9BRZ2 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.66
TRIM56Q9BRZ2 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 TSPY21P-201ENST00000433481 731 ntBASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 KRT16P5-201ENST00000455284 522 ntBASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 AC083906.6-201ENST00000641366 219 ntBASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TRIM56Q9BRZ2 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms