Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
VPS39Q96JC1 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS39Q96JC1 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS39Q96JC1 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS39Q96JC1 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS39Q96JC1 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS39Q96JC1 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS39Q96JC1 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS39Q96JC1 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.85■□□□□ 0.61
VPS39Q96JC1 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS39Q96JC1 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS39Q96JC1 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS39Q96JC1 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS39Q96JC1 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS39Q96JC1 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS39Q96JC1 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.85■□□□□ 0.61
VPS39Q96JC1 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS39Q96JC1 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS39Q96JC1 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS39Q96JC1 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.85■□□□□ 0.61
VPS39Q96JC1 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS39Q96JC1 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
VPS39Q96JC1 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VPS39Q96JC1 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.85■□□□□ 0.61
VPS39Q96JC1 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VPS39Q96JC1 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
VPS39Q96JC1 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS39Q96JC1 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS39Q96JC1 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS39Q96JC1 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS39Q96JC1 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS39Q96JC1 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS39Q96JC1 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS39Q96JC1 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.84■□□□□ 0.61
VPS39Q96JC1 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS39Q96JC1 OR6D1P-202ENST00000641007 5290 ntBASIC18.84■□□□□ 0.61
VPS39Q96JC1 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS39Q96JC1 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS39Q96JC1 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 POU5F1P3-201ENST00000428824 1078 ntBASIC18.84■□□□□ 0.61
VPS39Q96JC1 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS39Q96JC1 AC133681.1-201ENST00000465482 601 ntBASIC18.84■□□□□ 0.61
VPS39Q96JC1 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 AC110285.5-201ENST00000611501 352 ntBASIC18.84■□□□□ 0.61
VPS39Q96JC1 AL445675.2-201ENST00000620291 557 ntBASIC18.84■□□□□ 0.61
VPS39Q96JC1 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS39Q96JC1 AL390961.4-201ENST00000623958 2535 ntBASIC18.84■□□□□ 0.61
VPS39Q96JC1 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.84■□□□□ 0.61
VPS39Q96JC1 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS39Q96JC1 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS39Q96JC1 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
VPS39Q96JC1 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS39Q96JC1 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS39Q96JC1 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS39Q96JC1 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS39Q96JC1 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS39Q96JC1 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS39Q96JC1 HEIH-201ENST00000623091 1652 ntBASIC18.83■□□□□ 0.61
VPS39Q96JC1 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
VPS39Q96JC1 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS39Q96JC1 BICD1-207ENST00000551848 1962 ntBASIC18.83■□□□□ 0.61
VPS39Q96JC1 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS39Q96JC1 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS39Q96JC1 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
VPS39Q96JC1 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS39Q96JC1 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.83■□□□□ 0.6
VPS39Q96JC1 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS39Q96JC1 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS39Q96JC1 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.83■□□□□ 0.6
VPS39Q96JC1 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.83■□□□□ 0.6
VPS39Q96JC1 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.83■□□□□ 0.6
VPS39Q96JC1 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
VPS39Q96JC1 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS39Q96JC1 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
VPS39Q96JC1 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS39Q96JC1 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS39Q96JC1 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
VPS39Q96JC1 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS39Q96JC1 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS39Q96JC1 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS39Q96JC1 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS39Q96JC1 KRT8P11-201ENST00000409686 1436 ntBASIC18.83■□□□□ 0.6
VPS39Q96JC1 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS39Q96JC1 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms