Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 THAP5-204ENST00000438865 868 ntTSL 2 BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 COX20P2-201ENST00000452636 358 ntBASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 AC096582.2-201ENST00000510860 516 ntBASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SMC1BQ8NDV3 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC22.27■■□□□ 1.15
SMC1BQ8NDV3 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 RBM17P3-201ENST00000417687 1192 ntBASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 PON3-203ENST00000427422 894 ntTSL 3 BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 AC002347.1-201ENST00000569543 541 ntBASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SMC1BQ8NDV3 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 AL596442.2-201ENST00000610240 980 ntBASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 WWC2-AS2-201ENST00000578387 2183 ntBASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 PAN3-AS1-201ENST00000563843 1351 ntBASIC22.25■■□□□ 1.15
SMC1BQ8NDV3 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 RNA5SP416-201ENST00000516838 111 ntBASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 AC104390.1-201ENST00000555663 520 ntBASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 MTDHP3-201ENST00000594186 672 ntBASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 AC011467.4-201ENST00000594891 528 ntBASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC22.24■■□□□ 1.15
SMC1BQ8NDV3 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 WDR53-203ENST00000429115 683 ntTSL 2 BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 LHX6-205ENST00000464484 666 ntTSL 2 BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 HS6ST1P1-201ENST00000481504 1234 ntBASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
SMC1BQ8NDV3 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms