Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AP006294.2-201ENST00000641667 209 ntBASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
ZNF540Q8NDQ6 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
ZNF540Q8NDQ6 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
ZNF540Q8NDQ6 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
ZNF540Q8NDQ6 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
ZNF540Q8NDQ6 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 ESRRAP1-201ENST00000400596 1257 ntBASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 AC023632.3-201ENST00000521633 145 ntBASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 AC105020.6-201ENST00000621523 1217 ntBASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 AC139713.2-201ENST00000641328 2723 ntBASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
ZNF540Q8NDQ6 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 SDHAP1-207ENST00000440850 2000 ntBASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
ZNF540Q8NDQ6 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 AC116351.2-201ENST00000606540 1585 ntBASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 CYP2T3P-201ENST00000601990 817 ntBASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
ZNF540Q8NDQ6 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms