Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 TRIR-205ENST00000592273 783 ntTSL 3 BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 NARF-204ENST00000390006 1766 ntTSL 2 BASIC15.01□□□□□ -0.01
CLRN3Q8NCR9 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CLRN3Q8NCR9 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC15□□□□□ -0.01
CLRN3Q8NCR9 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC15□□□□□ -0.01
CLRN3Q8NCR9 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC15□□□□□ -0.01
CLRN3Q8NCR9 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15□□□□□ -0.01
CLRN3Q8NCR9 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15□□□□□ -0.01
CLRN3Q8NCR9 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC15□□□□□ -0.01
CLRN3Q8NCR9 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC15□□□□□ -0.01
CLRN3Q8NCR9 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC15□□□□□ -0.01
CLRN3Q8NCR9 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC15□□□□□ -0.01
CLRN3Q8NCR9 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15□□□□□ -0.01
CLRN3Q8NCR9 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CLRN3Q8NCR9 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
CLRN3Q8NCR9 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CLRN3Q8NCR9 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
CLRN3Q8NCR9 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CLRN3Q8NCR9 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15□□□□□ -0.01
CLRN3Q8NCR9 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
CLRN3Q8NCR9 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC15□□□□□ -0.01
CLRN3Q8NCR9 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC15□□□□□ -0.01
CLRN3Q8NCR9 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
CLRN3Q8NCR9 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CLRN3Q8NCR9 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
CLRN3Q8NCR9 BID-213ENST00000615414 2236 ntTSL 5 BASIC15□□□□□ -0.01
CLRN3Q8NCR9 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CLRN3Q8NCR9 LINC02199-201ENST00000506655 2702 ntBASIC15□□□□□ -0.01
CLRN3Q8NCR9 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CLRN3Q8NCR9 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC15□□□□□ -0.01
CLRN3Q8NCR9 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CLRN3Q8NCR9 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15□□□□□ -0.01
CLRN3Q8NCR9 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 AC061975.6-201ENST00000579045 1553 ntBASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 PXK-203ENST00000383715 1756 ntTSL 5 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 OR2A1-AS1-204ENST00000470435 602 ntBASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
CLRN3Q8NCR9 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
CLRN3Q8NCR9 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms