Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 BX842568.3-201ENST00000418104 571 ntBASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CCDC28AQ8IWP9 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.1
CCDC28AQ8IWP9 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC15.71■□□□□ 0.1
CCDC28AQ8IWP9 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC15.71■□□□□ 0.1
CCDC28AQ8IWP9 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC15.71■□□□□ 0.1
CCDC28AQ8IWP9 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.1
CCDC28AQ8IWP9 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.1
CCDC28AQ8IWP9 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.1
CCDC28AQ8IWP9 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
CCDC28AQ8IWP9 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 AC096631.2-201ENST00000436136 790 ntBASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 SLC47A1P1-202ENST00000449666 945 ntBASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 PBX2P1-201ENST00000493219 1291 ntBASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 AC024257.2-201ENST00000549699 147 ntBASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 AC126544.1-201ENST00000580842 1059 ntBASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 MIR4767-201ENST00000582827 78 ntBASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 RALB-208ENST00000631312 311 ntTSL 5 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CCDC28AQ8IWP9 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 FP475955.4-201ENST00000623131 1990 ntBASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 SMUG1P1-201ENST00000590640 811 ntBASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 AC233992.3-201ENST00000607491 485 ntBASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 AL662844.4-201ENST00000606367 2838 ntBASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
CCDC28AQ8IWP9 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC15.68■□□□□ 0.1
CCDC28AQ8IWP9 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms