Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX4Q33E94 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.49■□□□□ 0.39
RFX4Q33E94 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
RFX4Q33E94 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.49■□□□□ 0.39
RFX4Q33E94 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFX4Q33E94 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
RFX4Q33E94 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX4Q33E94 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX4Q33E94 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.48■□□□□ 0.39
RFX4Q33E94 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX4Q33E94 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX4Q33E94 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.48■□□□□ 0.39
RFX4Q33E94 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX4Q33E94 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFX4Q33E94 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
RFX4Q33E94 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX4Q33E94 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
RFX4Q33E94 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.48■□□□□ 0.39
RFX4Q33E94 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC17.48■□□□□ 0.39
RFX4Q33E94 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
RFX4Q33E94 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.48■□□□□ 0.39
RFX4Q33E94 DLX3-202ENST00000512495 834 ntTSL 2 BASIC17.48■□□□□ 0.39
RFX4Q33E94 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC17.48■□□□□ 0.39
RFX4Q33E94 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFX4Q33E94 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.48■□□□□ 0.39
RFX4Q33E94 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX4Q33E94 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFX4Q33E94 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX4Q33E94 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.48■□□□□ 0.39
RFX4Q33E94 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
RFX4Q33E94 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX4Q33E94 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
RFX4Q33E94 AC126763.1-201ENST00000552015 2118 ntBASIC17.48■□□□□ 0.39
RFX4Q33E94 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX4Q33E94 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFX4Q33E94 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFX4Q33E94 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFX4Q33E94 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
RFX4Q33E94 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX4Q33E94 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.47■□□□□ 0.39
RFX4Q33E94 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.47■□□□□ 0.39
RFX4Q33E94 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
RFX4Q33E94 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.47■□□□□ 0.39
RFX4Q33E94 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
RFX4Q33E94 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX4Q33E94 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX4Q33E94 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX4Q33E94 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX4Q33E94 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
RFX4Q33E94 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.47■□□□□ 0.39
RFX4Q33E94 SLC25A6P5-201ENST00000435663 894 ntBASIC17.47■□□□□ 0.39
RFX4Q33E94 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
RFX4Q33E94 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC17.47■□□□□ 0.39
RFX4Q33E94 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.47■□□□□ 0.39
RFX4Q33E94 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX4Q33E94 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
RFX4Q33E94 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.47■□□□□ 0.39
RFX4Q33E94 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RFX4Q33E94 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX4Q33E94 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.47■□□□□ 0.39
RFX4Q33E94 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
RFX4Q33E94 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX4Q33E94 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.47■□□□□ 0.39
RFX4Q33E94 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
RFX4Q33E94 AP006587.1-201ENST00000534129 1502 ntBASIC17.47■□□□□ 0.39
RFX4Q33E94 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.47■□□□□ 0.39
RFX4Q33E94 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX4Q33E94 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
RFX4Q33E94 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX4Q33E94 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX4Q33E94 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.46■□□□□ 0.39
RFX4Q33E94 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.46■□□□□ 0.39
RFX4Q33E94 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX4Q33E94 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX4Q33E94 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RFX4Q33E94 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
RFX4Q33E94 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC17.46■□□□□ 0.39
RFX4Q33E94 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.46■□□□□ 0.39
RFX4Q33E94 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.46■□□□□ 0.39
RFX4Q33E94 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
RFX4Q33E94 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.46■□□□□ 0.39
RFX4Q33E94 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.46■□□□□ 0.39
RFX4Q33E94 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
RFX4Q33E94 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.46■□□□□ 0.39
RFX4Q33E94 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
RFX4Q33E94 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX4Q33E94 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
RFX4Q33E94 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
RFX4Q33E94 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
RFX4Q33E94 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.46■□□□□ 0.39
RFX4Q33E94 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
RFX4Q33E94 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
RFX4Q33E94 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
RFX4Q33E94 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
RFX4Q33E94 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
RFX4Q33E94 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.45■□□□□ 0.38
RFX4Q33E94 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
RFX4Q33E94 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RFX4Q33E94 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
RFX4Q33E94 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms