Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC13.57□□□□□ -0.24
PRKDCP78527 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC13.57□□□□□ -0.24
PRKDCP78527 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PRKDCP78527 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC13.57□□□□□ -0.24
PRKDCP78527 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PRKDCP78527 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PRKDCP78527 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PRKDCP78527 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
PRKDCP78527 GOLGA6L5P-202ENST00000515341 1828 ntBASIC13.57□□□□□ -0.24
PRKDCP78527 FEM1AP4-201ENST00000443167 1987 ntBASIC13.57□□□□□ -0.24
PRKDCP78527 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
PRKDCP78527 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
PRKDCP78527 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
PRKDCP78527 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.57□□□□□ -0.24
PRKDCP78527 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC13.57□□□□□ -0.24
PRKDCP78527 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC13.57□□□□□ -0.24
PRKDCP78527 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PRKDCP78527 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC13.57□□□□□ -0.24
PRKDCP78527 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
PRKDCP78527 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
PRKDCP78527 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PRKDCP78527 HLA-J-201ENST00000462773 1622 ntBASIC13.56□□□□□ -0.24
PRKDCP78527 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
PRKDCP78527 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PRKDCP78527 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC13.56□□□□□ -0.24
PRKDCP78527 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC13.56□□□□□ -0.24
PRKDCP78527 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC13.56□□□□□ -0.24
PRKDCP78527 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC13.56□□□□□ -0.24
PRKDCP78527 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC13.56□□□□□ -0.24
PRKDCP78527 TEN1-204ENST00000588202 862 ntTSL 3 BASIC13.56□□□□□ -0.24
PRKDCP78527 PAN3-AS1-201ENST00000563843 1351 ntBASIC13.56□□□□□ -0.24
PRKDCP78527 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
PRKDCP78527 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
PRKDCP78527 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PRKDCP78527 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
PRKDCP78527 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC13.56□□□□□ -0.24
PRKDCP78527 AC005225.4-201ENST00000557330 545 ntBASIC13.56□□□□□ -0.24
PRKDCP78527 MTDHP3-201ENST00000594186 672 ntBASIC13.56□□□□□ -0.24
PRKDCP78527 AL078644.1-201ENST00000609881 752 ntBASIC13.56□□□□□ -0.24
PRKDCP78527 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PRKDCP78527 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC13.56□□□□□ -0.24
PRKDCP78527 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
PRKDCP78527 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PRKDCP78527 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PRKDCP78527 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC13.56□□□□□ -0.24
PRKDCP78527 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC13.56□□□□□ -0.24
PRKDCP78527 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
PRKDCP78527 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC13.56□□□□□ -0.24
PRKDCP78527 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC13.56□□□□□ -0.24
PRKDCP78527 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
PRKDCP78527 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PRKDCP78527 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PRKDCP78527 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC13.55□□□□□ -0.24
PRKDCP78527 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC13.55□□□□□ -0.24
PRKDCP78527 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC13.55□□□□□ -0.24
PRKDCP78527 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PRKDCP78527 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
PRKDCP78527 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
PRKDCP78527 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
PRKDCP78527 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC13.55□□□□□ -0.24
PRKDCP78527 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC13.55□□□□□ -0.24
PRKDCP78527 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
PRKDCP78527 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PRKDCP78527 RBSN-204ENST00000449050 903 ntTSL 2 BASIC13.55□□□□□ -0.24
PRKDCP78527 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
PRKDCP78527 PNMT-203ENST00000581428 677 ntTSL 2 BASIC13.55□□□□□ -0.24
PRKDCP78527 AC024563.2-201ENST00000603282 481 ntBASIC13.55□□□□□ -0.24
PRKDCP78527 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC13.55□□□□□ -0.24
PRKDCP78527 FBXW4P1-201ENST00000426721 2239 ntBASIC13.55□□□□□ -0.24
PRKDCP78527 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PRKDCP78527 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC13.55□□□□□ -0.24
PRKDCP78527 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
PRKDCP78527 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PRKDCP78527 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PRKDCP78527 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PRKDCP78527 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PRKDCP78527 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC13.55□□□□□ -0.24
PRKDCP78527 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC13.55□□□□□ -0.24
PRKDCP78527 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
PRKDCP78527 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
PRKDCP78527 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC13.55□□□□□ -0.24
PRKDCP78527 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC13.55□□□□□ -0.24
PRKDCP78527 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
PRKDCP78527 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
PRKDCP78527 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC13.54□□□□□ -0.24
PRKDCP78527 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
PRKDCP78527 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC13.54□□□□□ -0.24
PRKDCP78527 KRT18P27-201ENST00000427733 1299 ntBASIC13.54□□□□□ -0.24
PRKDCP78527 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC13.54□□□□□ -0.24
PRKDCP78527 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC13.54□□□□□ -0.24
PRKDCP78527 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
PRKDCP78527 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC13.54□□□□□ -0.24
PRKDCP78527 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PRKDCP78527 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
PRKDCP78527 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
PRKDCP78527 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
PRKDCP78527 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
PRKDCP78527 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
PRKDCP78527 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC13.54□□□□□ -0.24
PRKDCP78527 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms