Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.38■□□□□ 0.37
RNF4P78317 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.38■□□□□ 0.37
RNF4P78317 AC006011.2-201ENST00000621313 1158 ntBASIC17.38■□□□□ 0.37
RNF4P78317 AC068587.9-201ENST00000641814 219 ntBASIC17.38■□□□□ 0.37
RNF4P78317 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.38■□□□□ 0.37
RNF4P78317 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.38■□□□□ 0.37
RNF4P78317 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
RNF4P78317 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
RNF4P78317 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.38■□□□□ 0.37
RNF4P78317 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
RNF4P78317 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
RNF4P78317 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF4P78317 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.37■□□□□ 0.37
RNF4P78317 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF4P78317 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
RNF4P78317 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.37■□□□□ 0.37
RNF4P78317 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF4P78317 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.37■□□□□ 0.37
RNF4P78317 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
RNF4P78317 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
RNF4P78317 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.37■□□□□ 0.37
RNF4P78317 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.37■□□□□ 0.37
RNF4P78317 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
RNF4P78317 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.37■□□□□ 0.37
RNF4P78317 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.37■□□□□ 0.37
RNF4P78317 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.37■□□□□ 0.37
RNF4P78317 NEK4P2-201ENST00000580004 1012 ntBASIC17.37■□□□□ 0.37
RNF4P78317 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.37■□□□□ 0.37
RNF4P78317 AC139887.4-201ENST00000607877 719 ntBASIC17.37■□□□□ 0.37
RNF4P78317 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF4P78317 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.37■□□□□ 0.37
RNF4P78317 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
RNF4P78317 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF4P78317 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
RNF4P78317 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.37■□□□□ 0.37
RNF4P78317 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.37■□□□□ 0.37
RNF4P78317 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
RNF4P78317 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
RNF4P78317 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF4P78317 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
RNF4P78317 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
RNF4P78317 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.36■□□□□ 0.37
RNF4P78317 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
RNF4P78317 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF4P78317 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.36■□□□□ 0.37
RNF4P78317 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.36■□□□□ 0.37
RNF4P78317 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 AP000523.1-201ENST00000398242 1049 ntBASIC17.36■□□□□ 0.37
RNF4P78317 AC117947.1-201ENST00000427448 529 ntBASIC17.36■□□□□ 0.37
RNF4P78317 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.36■□□□□ 0.37
RNF4P78317 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.36■□□□□ 0.37
RNF4P78317 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.36■□□□□ 0.37
RNF4P78317 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC17.36■□□□□ 0.37
RNF4P78317 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.36■□□□□ 0.37
RNF4P78317 AL031432.5-201ENST00000641059 760 ntBASIC17.36■□□□□ 0.37
RNF4P78317 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
RNF4P78317 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.36■□□□□ 0.37
RNF4P78317 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.36■□□□□ 0.37
RNF4P78317 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
RNF4P78317 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms