Protein–RNA interactions for Protein: P68431

HIST1H3A, Histone H3.1, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H3AP68431 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HIST1H3AP68431 RCC2P3-201ENST00000418112 1537 ntBASIC16.42■□□□□ 0.22
HIST1H3AP68431 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HIST1H3AP68431 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HIST1H3AP68431 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 MIR718-201ENST00000390190 70 ntBASIC16.42■□□□□ 0.22
HIST1H3AP68431 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 AC097488.1-201ENST00000507834 756 ntBASIC16.42■□□□□ 0.22
HIST1H3AP68431 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HIST1H3AP68431 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 AP005242.2-201ENST00000580065 1175 ntBASIC16.42■□□□□ 0.22
HIST1H3AP68431 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HIST1H3AP68431 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HIST1H3AP68431 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HIST1H3AP68431 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
HIST1H3AP68431 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HIST1H3AP68431 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIST1H3AP68431 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIST1H3AP68431 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HIST1H3AP68431 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 AL109659.2-201ENST00000606809 1674 ntBASIC16.41■□□□□ 0.22
HIST1H3AP68431 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIST1H3AP68431 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIST1H3AP68431 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIST1H3AP68431 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIST1H3AP68431 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIST1H3AP68431 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIST1H3AP68431 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 TBC1D3P2-202ENST00000577902 1649 ntBASIC16.41■□□□□ 0.22
HIST1H3AP68431 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIST1H3AP68431 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HIST1H3AP68431 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.41■□□□□ 0.22
HIST1H3AP68431 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HIST1H3AP68431 AC090164.3-201ENST00000610780 2143 ntBASIC16.4■□□□□ 0.22
HIST1H3AP68431 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIST1H3AP68431 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIST1H3AP68431 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HIST1H3AP68431 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIST1H3AP68431 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIST1H3AP68431 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIST1H3AP68431 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 FDX2-206ENST00000492239 773 ntTSL 2 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 AP003071.4-201ENST00000562276 1284 ntBASIC16.4■□□□□ 0.22
HIST1H3AP68431 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HIST1H3AP68431 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIST1H3AP68431 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HIST1H3AP68431 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIST1H3AP68431 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIST1H3AP68431 AL357033.4-201ENST00000617703 1807 ntBASIC16.4■□□□□ 0.22
HIST1H3AP68431 AC073592.3-201ENST00000625118 1834 ntBASIC16.4■□□□□ 0.22
HIST1H3AP68431 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HIST1H3AP68431 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.4■□□□□ 0.22
HIST1H3AP68431 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.39■□□□□ 0.22
HIST1H3AP68431 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HIST1H3AP68431 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HIST1H3AP68431 AC005082.1-201ENST00000413042 2259 ntBASIC16.39■□□□□ 0.21
HIST1H3AP68431 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HIST1H3AP68431 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms