Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH13P55290 AC133681.1-201ENST00000465482 601 ntBASIC18.39■□□□□ 0.53
CDH13P55290 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.39■□□□□ 0.53
CDH13P55290 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.39■□□□□ 0.53
CDH13P55290 AL445675.2-201ENST00000620291 557 ntBASIC18.39■□□□□ 0.53
CDH13P55290 AC073648.6-201ENST00000641589 218 ntBASIC18.39■□□□□ 0.53
CDH13P55290 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH13P55290 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDH13P55290 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CDH13P55290 AL499627.1-201ENST00000569373 2188 ntBASIC18.39■□□□□ 0.53
CDH13P55290 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.39■□□□□ 0.53
CDH13P55290 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH13P55290 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.39■□□□□ 0.53
CDH13P55290 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.39■□□□□ 0.53
CDH13P55290 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH13P55290 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDH13P55290 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH13P55290 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH13P55290 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH13P55290 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH13P55290 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH13P55290 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CDH13P55290 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH13P55290 AL354751.1-201ENST00000412768 1863 ntBASIC18.38■□□□□ 0.53
CDH13P55290 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH13P55290 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH13P55290 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH13P55290 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH13P55290 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH13P55290 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH13P55290 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDH13P55290 AC006058.3-201ENST00000606217 1069 ntBASIC18.38■□□□□ 0.53
CDH13P55290 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CDH13P55290 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH13P55290 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH13P55290 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH13P55290 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH13P55290 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH13P55290 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.38■□□□□ 0.53
CDH13P55290 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH13P55290 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH13P55290 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.38■□□□□ 0.53
CDH13P55290 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CDH13P55290 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDH13P55290 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH13P55290 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.37■□□□□ 0.53
CDH13P55290 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CDH13P55290 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH13P55290 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
CDH13P55290 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 AC004980.1-204ENST00000429707 299 ntBASIC18.37■□□□□ 0.53
CDH13P55290 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH13P55290 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH13P55290 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH13P55290 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.37■□□□□ 0.53
CDH13P55290 AC131212.4-201ENST00000623606 975 ntBASIC18.37■□□□□ 0.53
CDH13P55290 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.37■□□□□ 0.53
CDH13P55290 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.37■□□□□ 0.53
CDH13P55290 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.37■□□□□ 0.53
CDH13P55290 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.37■□□□□ 0.53
CDH13P55290 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDH13P55290 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH13P55290 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.36■□□□□ 0.53
CDH13P55290 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH13P55290 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.36■□□□□ 0.53
CDH13P55290 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH13P55290 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH13P55290 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDH13P55290 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.36■□□□□ 0.53
CDH13P55290 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH13P55290 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH13P55290 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH13P55290 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH13P55290 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CDH13P55290 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDH13P55290 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH13P55290 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDH13P55290 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.36■□□□□ 0.53
CDH13P55290 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.36■□□□□ 0.53
CDH13P55290 NIFKP9-201ENST00000419265 221 ntBASIC18.36■□□□□ 0.53
CDH13P55290 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.36■□□□□ 0.53
CDH13P55290 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.36■□□□□ 0.53
CDH13P55290 RPS2P4-201ENST00000476944 856 ntBASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms