Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A4P53420 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.1■□□□□ 0.81
COL4A4P53420 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A4P53420 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A4P53420 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL4A4P53420 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.1■□□□□ 0.81
COL4A4P53420 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.1■□□□□ 0.81
COL4A4P53420 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
COL4A4P53420 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.1■□□□□ 0.81
COL4A4P53420 MIR3917-201ENST00000580971 93 ntBASIC20.1■□□□□ 0.81
COL4A4P53420 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
COL4A4P53420 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC20.09■□□□□ 0.81
COL4A4P53420 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A4P53420 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A4P53420 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.09■□□□□ 0.81
COL4A4P53420 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A4P53420 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A4P53420 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.09■□□□□ 0.81
COL4A4P53420 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.09■□□□□ 0.81
COL4A4P53420 MIR574-201ENST00000385209 96 ntBASIC20.09■□□□□ 0.81
COL4A4P53420 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.09■□□□□ 0.81
COL4A4P53420 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A4P53420 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC20.09■□□□□ 0.81
COL4A4P53420 REXO1L6P-202ENST00000619970 1078 ntBASIC20.09■□□□□ 0.81
COL4A4P53420 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.09■□□□□ 0.81
COL4A4P53420 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A4P53420 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
COL4A4P53420 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
COL4A4P53420 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
COL4A4P53420 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL4A4P53420 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.08■□□□□ 0.81
COL4A4P53420 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL4A4P53420 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL4A4P53420 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
COL4A4P53420 MIR662-201ENST00000384847 95 ntBASIC20.08■□□□□ 0.81
COL4A4P53420 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.08■□□□□ 0.81
COL4A4P53420 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.08■□□□□ 0.81
COL4A4P53420 AL353801.3-201ENST00000609898 542 ntBASIC20.08■□□□□ 0.81
COL4A4P53420 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.08■□□□□ 0.81
COL4A4P53420 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.08■□□□□ 0.8
COL4A4P53420 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL4A4P53420 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL4A4P53420 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
COL4A4P53420 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.07■□□□□ 0.8
COL4A4P53420 BAALC-204ENST00000330955 222 ntTSL 5 BASIC20.07■□□□□ 0.8
COL4A4P53420 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
COL4A4P53420 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A4P53420 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.07■□□□□ 0.8
COL4A4P53420 AL773604.1-201ENST00000617417 272 ntBASIC20.07■□□□□ 0.8
COL4A4P53420 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.07■□□□□ 0.8
COL4A4P53420 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A4P53420 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.07■□□□□ 0.8
COL4A4P53420 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A4P53420 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A4P53420 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A4P53420 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A4P53420 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.07■□□□□ 0.8
COL4A4P53420 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A4P53420 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
COL4A4P53420 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
COL4A4P53420 CALM3-211ENST00000598871 561 ntTSL 4 BASIC20.07■□□□□ 0.8
COL4A4P53420 GPR32P1-201ENST00000601788 811 ntBASIC20.07■□□□□ 0.8
COL4A4P53420 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.07■□□□□ 0.8
COL4A4P53420 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.06■□□□□ 0.8
COL4A4P53420 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A4P53420 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.06■□□□□ 0.8
COL4A4P53420 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A4P53420 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
COL4A4P53420 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A4P53420 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A4P53420 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC20.06■□□□□ 0.8
COL4A4P53420 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A4P53420 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
COL4A4P53420 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.06■□□□□ 0.8
COL4A4P53420 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A4P53420 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A4P53420 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A4P53420 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A4P53420 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A4P53420 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A4P53420 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
COL4A4P53420 AL590627.1-203ENST00000421194 1026 ntBASIC20.06■□□□□ 0.8
COL4A4P53420 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.06■□□□□ 0.8
COL4A4P53420 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.06■□□□□ 0.8
COL4A4P53420 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
COL4A4P53420 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.06■□□□□ 0.8
COL4A4P53420 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.06■□□□□ 0.8
COL4A4P53420 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.06■□□□□ 0.8
COL4A4P53420 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
COL4A4P53420 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.06■□□□□ 0.8
COL4A4P53420 AF228730.7-201ENST00000641842 219 ntBASIC20.06■□□□□ 0.8
COL4A4P53420 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
COL4A4P53420 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
COL4A4P53420 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A4P53420 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.05■□□□□ 0.8
COL4A4P53420 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.05■□□□□ 0.8
COL4A4P53420 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.05■□□□□ 0.8
COL4A4P53420 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
COL4A4P53420 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.05■□□□□ 0.8
COL4A4P53420 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms