Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LHX1P48742 STARP1-201ENST00000397973 869 ntBASIC19.9■□□□□ 0.78
LHX1P48742 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
LHX1P48742 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LHX1P48742 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.9■□□□□ 0.78
LHX1P48742 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.9■□□□□ 0.78
LHX1P48742 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LHX1P48742 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.9■□□□□ 0.78
LHX1P48742 AC087388.1-201ENST00000571370 1112 ntBASIC19.9■□□□□ 0.78
LHX1P48742 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
LHX1P48742 AC024243.1-201ENST00000609234 778 ntBASIC19.9■□□□□ 0.78
LHX1P48742 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.9■□□□□ 0.78
LHX1P48742 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.9■□□□□ 0.78
LHX1P48742 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LHX1P48742 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.9■□□□□ 0.78
LHX1P48742 HOXB1-202ENST00000577092 1414 ntBASIC19.9■□□□□ 0.78
LHX1P48742 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.9■□□□□ 0.78
LHX1P48742 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LHX1P48742 AC034236.2-201ENST00000606662 1610 ntBASIC19.9■□□□□ 0.78
LHX1P48742 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
LHX1P48742 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LHX1P48742 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
LHX1P48742 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
LHX1P48742 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LHX1P48742 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LHX1P48742 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LHX1P48742 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
LHX1P48742 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LHX1P48742 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LHX1P48742 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LHX1P48742 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.89■□□□□ 0.77
LHX1P48742 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.89■□□□□ 0.77
LHX1P48742 AC034232.1-201ENST00000506026 1064 ntBASIC19.89■□□□□ 0.77
LHX1P48742 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
LHX1P48742 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LHX1P48742 MYC-208ENST00000641036 567 ntBASIC19.89■□□□□ 0.77
LHX1P48742 AC083906.6-201ENST00000641366 219 ntBASIC19.89■□□□□ 0.77
LHX1P48742 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LHX1P48742 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LHX1P48742 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
LHX1P48742 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LHX1P48742 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.88■□□□□ 0.77
LHX1P48742 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.88■□□□□ 0.77
LHX1P48742 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
LHX1P48742 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
LHX1P48742 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 KRT18P23-201ENST00000435622 1283 ntBASIC19.88■□□□□ 0.77
LHX1P48742 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.88■□□□□ 0.77
LHX1P48742 AL359075.1-203ENST00000462729 1002 ntBASIC19.88■□□□□ 0.77
LHX1P48742 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.88■□□□□ 0.77
LHX1P48742 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.88■□□□□ 0.77
LHX1P48742 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.88■□□□□ 0.77
LHX1P48742 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.88■□□□□ 0.77
LHX1P48742 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
LHX1P48742 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.88■□□□□ 0.77
LHX1P48742 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.88■□□□□ 0.77
LHX1P48742 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
LHX1P48742 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
LHX1P48742 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
LHX1P48742 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.88■□□□□ 0.77
LHX1P48742 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.88■□□□□ 0.77
LHX1P48742 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX1P48742 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.87■□□□□ 0.77
LHX1P48742 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
LHX1P48742 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
LHX1P48742 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX1P48742 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX1P48742 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LHX1P48742 SEC1P-202ENST00000473944 940 ntBASIC19.87■□□□□ 0.77
LHX1P48742 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX1P48742 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.87■□□□□ 0.77
LHX1P48742 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
LHX1P48742 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX1P48742 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX1P48742 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
LHX1P48742 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
LHX1P48742 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.87■□□□□ 0.77
LHX1P48742 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LHX1P48742 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.87■□□□□ 0.77
LHX1P48742 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LHX1P48742 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
LHX1P48742 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.86■□□□□ 0.77
LHX1P48742 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LHX1P48742 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms