Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.55■□□□□ 0.24
SOX2P48431 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 SLC29A4P1-201ENST00000398760 971 ntBASIC16.55■□□□□ 0.24
SOX2P48431 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC16.55■□□□□ 0.24
SOX2P48431 RHEB-204ENST00000472642 900 ntTSL 3 BASIC16.55■□□□□ 0.24
SOX2P48431 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.55■□□□□ 0.24
SOX2P48431 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
SOX2P48431 PNMA6B-201ENST00000538162 1200 ntBASIC16.55■□□□□ 0.24
SOX2P48431 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC16.55■□□□□ 0.24
SOX2P48431 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
SOX2P48431 AC120498.8-201ENST00000614275 531 ntBASIC16.55■□□□□ 0.24
SOX2P48431 HLA-B-256ENST00000639848 1089 ntBASIC16.55■□□□□ 0.24
SOX2P48431 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.55■□□□□ 0.24
SOX2P48431 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
SOX2P48431 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
SOX2P48431 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.55■□□□□ 0.24
SOX2P48431 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
SOX2P48431 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
SOX2P48431 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
SOX2P48431 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX2P48431 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.54■□□□□ 0.24
SOX2P48431 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
SOX2P48431 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX2P48431 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
SOX2P48431 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX2P48431 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC16.54■□□□□ 0.24
SOX2P48431 AC097658.1-201ENST00000475555 843 ntBASIC16.54■□□□□ 0.24
SOX2P48431 OR2A1-AS1-207ENST00000486094 819 ntBASIC16.54■□□□□ 0.24
SOX2P48431 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX2P48431 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC16.54■□□□□ 0.24
SOX2P48431 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC16.54■□□□□ 0.24
SOX2P48431 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX2P48431 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
SOX2P48431 AL137784.2-201ENST00000607332 1000 ntBASIC16.54■□□□□ 0.24
SOX2P48431 AL121829.2-201ENST00000620908 328 ntBASIC16.54■□□□□ 0.24
SOX2P48431 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX2P48431 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
SOX2P48431 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
SOX2P48431 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
SOX2P48431 ABALON-201ENST00000629058 1903 ntBASIC16.54■□□□□ 0.24
SOX2P48431 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
SOX2P48431 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SOX2P48431 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
SOX2P48431 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX2P48431 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC16.54■□□□□ 0.24
SOX2P48431 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC16.53■□□□□ 0.24
SOX2P48431 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC16.53■□□□□ 0.24
SOX2P48431 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX2P48431 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
SOX2P48431 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC16.53■□□□□ 0.24
SOX2P48431 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX2P48431 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms