Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
HNF4AP41235 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HNF4AP41235 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.23■□□□□ 0.51
HNF4AP41235 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HNF4AP41235 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HNF4AP41235 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HNF4AP41235 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HNF4AP41235 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HNF4AP41235 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HNF4AP41235 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HNF4AP41235 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
HNF4AP41235 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.23■□□□□ 0.51
HNF4AP41235 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HNF4AP41235 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HNF4AP41235 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HNF4AP41235 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.23■□□□□ 0.51
HNF4AP41235 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HNF4AP41235 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HNF4AP41235 MESTP1-201ENST00000404287 994 ntBASIC18.23■□□□□ 0.51
HNF4AP41235 AL596275.1-201ENST00000423464 877 ntBASIC18.23■□□□□ 0.51
HNF4AP41235 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.23■□□□□ 0.51
HNF4AP41235 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HNF4AP41235 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.23■□□□□ 0.51
HNF4AP41235 REXO1L10P-201ENST00000615707 1290 ntBASIC18.23■□□□□ 0.51
HNF4AP41235 REXO1L12P-201ENST00000622156 912 ntBASIC18.23■□□□□ 0.51
HNF4AP41235 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.23■□□□□ 0.51
HNF4AP41235 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.23■□□□□ 0.51
HNF4AP41235 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HNF4AP41235 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.23■□□□□ 0.51
HNF4AP41235 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.23■□□□□ 0.51
HNF4AP41235 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HNF4AP41235 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HNF4AP41235 KRT8P3-201ENST00000519669 1449 ntBASIC18.23■□□□□ 0.51
HNF4AP41235 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.23■□□□□ 0.51
HNF4AP41235 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.23■□□□□ 0.51
HNF4AP41235 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
HNF4AP41235 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HNF4AP41235 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
HNF4AP41235 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HNF4AP41235 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.22■□□□□ 0.51
HNF4AP41235 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HNF4AP41235 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HNF4AP41235 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HNF4AP41235 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.22■□□□□ 0.51
HNF4AP41235 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
HNF4AP41235 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.22■□□□□ 0.51
HNF4AP41235 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HNF4AP41235 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.22■□□□□ 0.51
HNF4AP41235 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.22■□□□□ 0.51
HNF4AP41235 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HNF4AP41235 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.22■□□□□ 0.51
HNF4AP41235 CKBP1-201ENST00000565489 1086 ntBASIC18.22■□□□□ 0.51
HNF4AP41235 MIR4497-201ENST00000583208 89 ntBASIC18.22■□□□□ 0.51
HNF4AP41235 MIR4785-201ENST00000585005 73 ntBASIC18.22■□□□□ 0.51
HNF4AP41235 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
HNF4AP41235 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.22■□□□□ 0.51
HNF4AP41235 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HNF4AP41235 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
HNF4AP41235 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
HNF4AP41235 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HNF4AP41235 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.22■□□□□ 0.51
HNF4AP41235 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HNF4AP41235 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
HNF4AP41235 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HNF4AP41235 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HNF4AP41235 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.22■□□□□ 0.51
HNF4AP41235 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HNF4AP41235 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
HNF4AP41235 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.21■□□□□ 0.51
HNF4AP41235 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
HNF4AP41235 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.21■□□□□ 0.51
HNF4AP41235 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.21■□□□□ 0.51
HNF4AP41235 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HNF4AP41235 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HNF4AP41235 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HNF4AP41235 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.21■□□□□ 0.51
HNF4AP41235 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.21■□□□□ 0.51
HNF4AP41235 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HNF4AP41235 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.21■□□□□ 0.51
HNF4AP41235 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.21■□□□□ 0.51
HNF4AP41235 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.21■□□□□ 0.51
HNF4AP41235 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.21■□□□□ 0.51
HNF4AP41235 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
HNF4AP41235 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HNF4AP41235 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HNF4AP41235 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.21■□□□□ 0.51
HNF4AP41235 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.21■□□□□ 0.51
HNF4AP41235 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HNF4AP41235 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
HNF4AP41235 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
HNF4AP41235 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.2■□□□□ 0.5
HNF4AP41235 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.2■□□□□ 0.5
HNF4AP41235 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HNF4AP41235 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms