Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCNAP12004 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.31■□□□□ 0.52
PCNAP12004 GCSHP5-201ENST00000443090 522 ntBASIC18.31■□□□□ 0.52
PCNAP12004 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
PCNAP12004 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
PCNAP12004 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.31■□□□□ 0.52
PCNAP12004 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.31■□□□□ 0.52
PCNAP12004 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCNAP12004 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCNAP12004 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCNAP12004 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCNAP12004 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCNAP12004 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCNAP12004 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCNAP12004 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.31■□□□□ 0.52
PCNAP12004 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCNAP12004 HTR7P1-202ENST00000624664 4411 ntBASIC18.31■□□□□ 0.52
PCNAP12004 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCNAP12004 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
PCNAP12004 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCNAP12004 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCNAP12004 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
PCNAP12004 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
PCNAP12004 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
PCNAP12004 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.3■□□□□ 0.52
PCNAP12004 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PCNAP12004 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
PCNAP12004 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.3■□□□□ 0.52
PCNAP12004 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
PCNAP12004 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.3■□□□□ 0.52
PCNAP12004 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
PCNAP12004 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
PCNAP12004 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.3■□□□□ 0.52
PCNAP12004 AL031985.4-201ENST00000642138 673 ntBASIC18.3■□□□□ 0.52
PCNAP12004 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.3■□□□□ 0.52
PCNAP12004 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PCNAP12004 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
PCNAP12004 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.3■□□□□ 0.52
PCNAP12004 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 AC009113.1-201ENST00000570267 2443 ntBASIC18.3■□□□□ 0.52
PCNAP12004 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.3■□□□□ 0.52
PCNAP12004 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PCNAP12004 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCNAP12004 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCNAP12004 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
PCNAP12004 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PCNAP12004 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
PCNAP12004 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
PCNAP12004 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.29■□□□□ 0.52
PCNAP12004 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC18.29■□□□□ 0.52
PCNAP12004 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PCNAP12004 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
PCNAP12004 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.29■□□□□ 0.52
PCNAP12004 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCNAP12004 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.29■□□□□ 0.52
PCNAP12004 FAM197Y1-201ENST00000421178 764 ntBASIC18.29■□□□□ 0.52
PCNAP12004 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCNAP12004 UBE2SP1-201ENST00000450587 669 ntBASIC18.29■□□□□ 0.52
PCNAP12004 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.29■□□□□ 0.52
PCNAP12004 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCNAP12004 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PCNAP12004 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCNAP12004 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
PCNAP12004 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCNAP12004 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.29■□□□□ 0.52
PCNAP12004 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCNAP12004 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCNAP12004 RCC2P6-201ENST00000526625 1557 ntBASIC18.29■□□□□ 0.52
PCNAP12004 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCNAP12004 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCNAP12004 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCNAP12004 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.28■□□□□ 0.52
PCNAP12004 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCNAP12004 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCNAP12004 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
PCNAP12004 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCNAP12004 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCNAP12004 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCNAP12004 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms