Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
HOXC4P09017 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXC4P09017 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HOXC4P09017 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXC4P09017 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HOXC4P09017 MTMR9LP-203ENST00000426597 1545 ntBASIC18.33■□□□□ 0.52
HOXC4P09017 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.33■□□□□ 0.52
HOXC4P09017 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HOXC4P09017 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HOXC4P09017 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXC4P09017 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.32■□□□□ 0.52
HOXC4P09017 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC4P09017 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.32■□□□□ 0.52
HOXC4P09017 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC4P09017 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.32■□□□□ 0.52
HOXC4P09017 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.32■□□□□ 0.52
HOXC4P09017 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC4P09017 AL391807.1-203ENST00000604392 2365 ntBASIC18.32■□□□□ 0.52
HOXC4P09017 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC4P09017 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC4P09017 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.32■□□□□ 0.52
HOXC4P09017 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC4P09017 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC4P09017 MIR662-201ENST00000384847 95 ntBASIC18.32■□□□□ 0.52
HOXC4P09017 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.32■□□□□ 0.52
HOXC4P09017 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.32■□□□□ 0.52
HOXC4P09017 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
HOXC4P09017 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.32■□□□□ 0.52
HOXC4P09017 AL136038.4-201ENST00000603606 1261 ntBASIC18.32■□□□□ 0.52
HOXC4P09017 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC4P09017 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC4P09017 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC4P09017 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
HOXC4P09017 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
HOXC4P09017 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC4P09017 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC4P09017 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.31■□□□□ 0.52
HOXC4P09017 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC4P09017 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
HOXC4P09017 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.31■□□□□ 0.52
HOXC4P09017 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC4P09017 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC4P09017 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
HOXC4P09017 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
HOXC4P09017 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC4P09017 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.31■□□□□ 0.52
HOXC4P09017 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC4P09017 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC4P09017 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.31■□□□□ 0.52
HOXC4P09017 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC18.31■□□□□ 0.52
HOXC4P09017 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.31■□□□□ 0.52
HOXC4P09017 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
HOXC4P09017 PVRIG2P-201ENST00000435460 978 ntBASIC18.31■□□□□ 0.52
HOXC4P09017 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC4P09017 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC4P09017 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.31■□□□□ 0.52
HOXC4P09017 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC4P09017 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
HOXC4P09017 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC4P09017 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
HOXC4P09017 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC4P09017 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.31■□□□□ 0.52
HOXC4P09017 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.31■□□□□ 0.52
HOXC4P09017 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.3■□□□□ 0.52
HOXC4P09017 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC4P09017 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.3■□□□□ 0.52
HOXC4P09017 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.3■□□□□ 0.52
HOXC4P09017 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC4P09017 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC4P09017 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC4P09017 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC4P09017 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
HOXC4P09017 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC4P09017 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC4P09017 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.3■□□□□ 0.52
HOXC4P09017 AL645929.1-201ENST00000420084 975 ntBASIC18.3■□□□□ 0.52
HOXC4P09017 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.3■□□□□ 0.52
HOXC4P09017 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.3■□□□□ 0.52
HOXC4P09017 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.3■□□□□ 0.52
HOXC4P09017 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC4P09017 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC4P09017 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
HOXC4P09017 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.3■□□□□ 0.52
HOXC4P09017 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC4P09017 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
HOXC4P09017 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.3■□□□□ 0.52
HOXC4P09017 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.3■□□□□ 0.52
HOXC4P09017 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC4P09017 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC4P09017 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.29■□□□□ 0.52
HOXC4P09017 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC4P09017 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
HOXC4P09017 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC4P09017 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC4P09017 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC4P09017 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC4P09017 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC4P09017 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC4P09017 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.29■□□□□ 0.52
HOXC4P09017 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms