Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
APOEP02649 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
APOEP02649 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.68■□□□□ 0.74
APOEP02649 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
APOEP02649 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.68■□□□□ 0.74
APOEP02649 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
APOEP02649 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.68■□□□□ 0.74
APOEP02649 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.68■□□□□ 0.74
APOEP02649 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.68■□□□□ 0.74
APOEP02649 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
APOEP02649 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
APOEP02649 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.68■□□□□ 0.74
APOEP02649 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
APOEP02649 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
APOEP02649 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
APOEP02649 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
APOEP02649 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
APOEP02649 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
APOEP02649 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
APOEP02649 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.68■□□□□ 0.74
APOEP02649 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
APOEP02649 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
APOEP02649 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.67■□□□□ 0.74
APOEP02649 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.67■□□□□ 0.74
APOEP02649 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.67■□□□□ 0.74
APOEP02649 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
APOEP02649 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
APOEP02649 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
APOEP02649 HCG11-201ENST00000411553 5696 ntBASIC19.67■□□□□ 0.74
APOEP02649 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
APOEP02649 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.67■□□□□ 0.74
APOEP02649 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.67■□□□□ 0.74
APOEP02649 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
APOEP02649 AL353719.1-201ENST00000566847 864 ntBASIC19.67■□□□□ 0.74
APOEP02649 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.67■□□□□ 0.74
APOEP02649 AL023803.3-201ENST00000615559 522 ntBASIC19.67■□□□□ 0.74
APOEP02649 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
APOEP02649 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.67■□□□□ 0.74
APOEP02649 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
APOEP02649 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.67■□□□□ 0.74
APOEP02649 AC092338.2-201ENST00000568827 1415 ntBASIC19.67■□□□□ 0.74
APOEP02649 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
APOEP02649 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
APOEP02649 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
APOEP02649 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
APOEP02649 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.66■□□□□ 0.74
APOEP02649 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.66■□□□□ 0.74
APOEP02649 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
APOEP02649 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
APOEP02649 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.66■□□□□ 0.74
APOEP02649 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.66■□□□□ 0.74
APOEP02649 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
APOEP02649 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
APOEP02649 AC007663.1-201ENST00000438948 1240 ntBASIC19.66■□□□□ 0.74
APOEP02649 ECEL1P2-202ENST00000465689 757 ntBASIC19.66■□□□□ 0.74
APOEP02649 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.66■□□□□ 0.74
APOEP02649 AC005363.2-201ENST00000618631 242 ntBASIC19.66■□□□□ 0.74
APOEP02649 AC010653.2-201ENST00000623505 997 ntBASIC19.66■□□□□ 0.74
APOEP02649 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.66■□□□□ 0.74
APOEP02649 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
APOEP02649 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.66■□□□□ 0.74
APOEP02649 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
APOEP02649 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
APOEP02649 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
APOEP02649 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
APOEP02649 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
APOEP02649 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
APOEP02649 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
APOEP02649 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
APOEP02649 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
APOEP02649 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.65■□□□□ 0.74
APOEP02649 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
APOEP02649 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
APOEP02649 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
APOEP02649 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
APOEP02649 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
APOEP02649 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.65■□□□□ 0.74
APOEP02649 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.65■□□□□ 0.74
APOEP02649 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
APOEP02649 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
APOEP02649 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
APOEP02649 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
APOEP02649 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
APOEP02649 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
APOEP02649 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
APOEP02649 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
APOEP02649 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.64■□□□□ 0.74
APOEP02649 INGX-201ENST00000359239 846 ntBASIC19.64■□□□□ 0.73
APOEP02649 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
APOEP02649 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.64■□□□□ 0.73
APOEP02649 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.64■□□□□ 0.73
APOEP02649 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.64■□□□□ 0.73
APOEP02649 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
APOEP02649 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.64■□□□□ 0.73
APOEP02649 SLC25A3P1-201ENST00000443844 931 ntBASIC19.64■□□□□ 0.73
APOEP02649 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
APOEP02649 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.64■□□□□ 0.73
APOEP02649 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
APOEP02649 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
APOEP02649 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms