Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 HLA-G-202ENST00000376815 851 ntBASIC14.14□□□□□ -0.15
HLA-DQA1P01909 HLA-G-203ENST00000376818 1127 ntBASIC14.14□□□□□ -0.15
HLA-DQA1P01909 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 CPT2-209ENST00000636935 803 ntTSL 5 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 NFIC-211ENST00000641145 8399 ntBASIC14.14□□□□□ -0.15
HLA-DQA1P01909 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 AL139384.1-201ENST00000612143 3047 ntBASIC14.14□□□□□ -0.15
HLA-DQA1P01909 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 AC019069.1-201ENST00000610008 1333 ntBASIC14.14□□□□□ -0.15
HLA-DQA1P01909 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HLA-DQA1P01909 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 KRT87P-202ENST00000534226 1464 ntBASIC14.13□□□□□ -0.15
HLA-DQA1P01909 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 LINC02228-203ENST00000641970 1355 ntBASIC14.13□□□□□ -0.15
HLA-DQA1P01909 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 JTB-203ENST00000368589 1216 ntTSL 2 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 SERP1-208ENST00000491660 830 ntTSL 2 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 UBQLN4P1-201ENST00000461599 1801 ntBASIC14.13□□□□□ -0.15
HLA-DQA1P01909 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HLA-DQA1P01909 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 TPRG1LP1-201ENST00000598702 760 ntBASIC14.12□□□□□ -0.15
HLA-DQA1P01909 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
HLA-DQA1P01909 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms