Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC008556.1-201ENST00000610908 2040 ntBASIC18.35■□□□□ 0.53
SDC3O75056 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC3O75056 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SDC3O75056 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC3O75056 TREX1-205ENST00000625293 1783 ntBASIC18.35■□□□□ 0.53
SDC3O75056 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC3O75056 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SDC3O75056 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.35■□□□□ 0.53
SDC3O75056 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC3O75056 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.35■□□□□ 0.53
SDC3O75056 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC3O75056 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.35■□□□□ 0.53
SDC3O75056 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SDC3O75056 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC3O75056 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SDC3O75056 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.35■□□□□ 0.53
SDC3O75056 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.35■□□□□ 0.53
SDC3O75056 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.35■□□□□ 0.53
SDC3O75056 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC3O75056 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.35■□□□□ 0.53
SDC3O75056 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC3O75056 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.35■□□□□ 0.53
SDC3O75056 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.35■□□□□ 0.53
SDC3O75056 AL136038.4-201ENST00000603606 1261 ntBASIC18.35■□□□□ 0.53
SDC3O75056 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC3O75056 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.35■□□□□ 0.53
SDC3O75056 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SDC3O75056 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SDC3O75056 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.35■□□□□ 0.53
SDC3O75056 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.34■□□□□ 0.53
SDC3O75056 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SDC3O75056 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
SDC3O75056 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SDC3O75056 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC3O75056 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SDC3O75056 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SDC3O75056 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC3O75056 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SDC3O75056 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC3O75056 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC3O75056 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SDC3O75056 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.34■□□□□ 0.53
SDC3O75056 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SDC3O75056 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC3O75056 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC3O75056 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC3O75056 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SDC3O75056 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.34■□□□□ 0.53
SDC3O75056 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC3O75056 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.34■□□□□ 0.53
SDC3O75056 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.34■□□□□ 0.53
SDC3O75056 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.34■□□□□ 0.53
SDC3O75056 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SDC3O75056 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
SDC3O75056 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SDC3O75056 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC3O75056 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SDC3O75056 TEX21P-204ENST00000641479 1693 ntBASIC18.34■□□□□ 0.53
SDC3O75056 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.34■□□□□ 0.53
SDC3O75056 AC125437.2-201ENST00000625180 2167 ntBASIC18.34■□□□□ 0.53
SDC3O75056 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SDC3O75056 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SDC3O75056 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SDC3O75056 LINC01521-201ENST00000504184 1943 ntBASIC18.33■□□□□ 0.53
SDC3O75056 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
SDC3O75056 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SDC3O75056 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.33■□□□□ 0.53
SDC3O75056 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.33■□□□□ 0.53
SDC3O75056 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.33■□□□□ 0.53
SDC3O75056 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SDC3O75056 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.33■□□□□ 0.53
SDC3O75056 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
SDC3O75056 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
SDC3O75056 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.33■□□□□ 0.52
SDC3O75056 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.33■□□□□ 0.52
SDC3O75056 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
SDC3O75056 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.33■□□□□ 0.52
SDC3O75056 MIR3917-201ENST00000580971 93 ntBASIC18.33■□□□□ 0.52
SDC3O75056 AP002414.4-201ENST00000589764 1148 ntBASIC18.33■□□□□ 0.52
SDC3O75056 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.33■□□□□ 0.52
SDC3O75056 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.33■□□□□ 0.52
SDC3O75056 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.33■□□□□ 0.52
SDC3O75056 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SDC3O75056 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.33■□□□□ 0.52
SDC3O75056 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms