Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PRKNO60260 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.47■□□□□ 0.39
PRKNO60260 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PRKNO60260 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PRKNO60260 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.47■□□□□ 0.39
PRKNO60260 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.47■□□□□ 0.39
PRKNO60260 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
PRKNO60260 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
PRKNO60260 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PRKNO60260 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.47■□□□□ 0.39
PRKNO60260 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
PRKNO60260 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.47■□□□□ 0.39
PRKNO60260 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
PRKNO60260 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PRKNO60260 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PRKNO60260 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
PRKNO60260 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.47■□□□□ 0.39
PRKNO60260 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
PRKNO60260 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.47■□□□□ 0.39
PRKNO60260 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC17.47■□□□□ 0.39
PRKNO60260 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PRKNO60260 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.47■□□□□ 0.39
PRKNO60260 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PRKNO60260 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PRKNO60260 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PRKNO60260 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PRKNO60260 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
PRKNO60260 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.47■□□□□ 0.39
PRKNO60260 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
PRKNO60260 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.46■□□□□ 0.39
PRKNO60260 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PRKNO60260 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
PRKNO60260 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PRKNO60260 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PRKNO60260 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PRKNO60260 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
PRKNO60260 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PRKNO60260 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PRKNO60260 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PRKNO60260 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
PRKNO60260 MIR1224-201ENST00000408193 85 ntBASIC17.46■□□□□ 0.39
PRKNO60260 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.46■□□□□ 0.39
PRKNO60260 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.46■□□□□ 0.39
PRKNO60260 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.46■□□□□ 0.39
PRKNO60260 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PRKNO60260 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.46■□□□□ 0.39
PRKNO60260 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.46■□□□□ 0.39
PRKNO60260 AC141257.4-201ENST00000634557 245 ntBASIC17.46■□□□□ 0.39
PRKNO60260 AC136944.6-201ENST00000634818 245 ntBASIC17.46■□□□□ 0.39
PRKNO60260 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PRKNO60260 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PRKNO60260 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PRKNO60260 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PRKNO60260 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.46■□□□□ 0.39
PRKNO60260 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PRKNO60260 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
PRKNO60260 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PRKNO60260 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PRKNO60260 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.45■□□□□ 0.38
PRKNO60260 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
PRKNO60260 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PRKNO60260 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
PRKNO60260 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 AC117947.1-201ENST00000427448 529 ntBASIC17.45■□□□□ 0.38
PRKNO60260 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.45■□□□□ 0.38
PRKNO60260 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.45■□□□□ 0.38
PRKNO60260 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.45■□□□□ 0.38
PRKNO60260 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.45■□□□□ 0.38
PRKNO60260 AC010331.1-201ENST00000611423 582 ntBASIC17.45■□□□□ 0.38
PRKNO60260 CR769767.2-201ENST00000622735 460 ntBASIC17.45■□□□□ 0.38
PRKNO60260 AL512353.2-201ENST00000448759 1962 ntBASIC17.45■□□□□ 0.38
PRKNO60260 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.45■□□□□ 0.38
PRKNO60260 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.45■□□□□ 0.38
PRKNO60260 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PRKNO60260 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.45■□□□□ 0.38
PRKNO60260 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.45■□□□□ 0.38
PRKNO60260 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 AC099343.3-201ENST00000605834 2503 ntBASIC17.45■□□□□ 0.38
PRKNO60260 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PRKNO60260 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PRKNO60260 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
PRKNO60260 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms