Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 CKBP1-201ENST00000565489 1086 ntBASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
NOTCH3Q9UM47 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NOTCH3Q9UM47 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NOTCH3Q9UM47 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC14.52□□□□□ -0.09
NOTCH3Q9UM47 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC14.52□□□□□ -0.09
NOTCH3Q9UM47 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NOTCH3Q9UM47 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC14.52□□□□□ -0.09
NOTCH3Q9UM47 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC14.52□□□□□ -0.09
NOTCH3Q9UM47 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NOTCH3Q9UM47 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NOTCH3Q9UM47 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NOTCH3Q9UM47 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NOTCH3Q9UM47 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC14.52□□□□□ -0.09
NOTCH3Q9UM47 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC14.52□□□□□ -0.09
NOTCH3Q9UM47 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NOTCH3Q9UM47 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC14.52□□□□□ -0.09
NOTCH3Q9UM47 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 KRT18P38-201ENST00000449496 1282 ntBASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 PP7080-204ENST00000510714 601 ntTSL 3 BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 AC092720.2-201ENST00000602388 1665 ntBASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
NOTCH3Q9UM47 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 AL160286.2-201ENST00000567150 934 ntBASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 MIR3652-201ENST00000579335 131 ntBASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 AC036111.1-201ENST00000533973 1582 ntBASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 AC012313.10-201ENST00000623509 926 ntBASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
NOTCH3Q9UM47 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms