Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL20A1Q9P218 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC21.29■■□□□ 1
COL20A1Q9P218 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL20A1Q9P218 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL20A1Q9P218 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.29■■□□□ 1
COL20A1Q9P218 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.29■■□□□ 1
COL20A1Q9P218 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL20A1Q9P218 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC21.29■■□□□ 1
COL20A1Q9P218 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.29■■□□□ 1
COL20A1Q9P218 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.29■■□□□ 1
COL20A1Q9P218 MIR3917-201ENST00000580971 93 ntBASIC21.29■■□□□ 1
COL20A1Q9P218 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.29■■□□□ 1
COL20A1Q9P218 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.29■■□□□ 1
COL20A1Q9P218 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL20A1Q9P218 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL20A1Q9P218 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
COL20A1Q9P218 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL20A1Q9P218 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
COL20A1Q9P218 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC21.29■■□□□ 1
COL20A1Q9P218 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC21.29■■□□□ 1
COL20A1Q9P218 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
COL20A1Q9P218 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL20A1Q9P218 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL20A1Q9P218 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL20A1Q9P218 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL20A1Q9P218 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.28■■□□□ 1
COL20A1Q9P218 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL20A1Q9P218 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC21.28■■□□□ 1
COL20A1Q9P218 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL20A1Q9P218 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC21.28■■□□□ 1
COL20A1Q9P218 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL20A1Q9P218 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC21.28■■□□□ 1
COL20A1Q9P218 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
COL20A1Q9P218 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
COL20A1Q9P218 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL20A1Q9P218 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
COL20A1Q9P218 HOXB1-202ENST00000577092 1414 ntBASIC21.28■■□□□ 1
COL20A1Q9P218 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL20A1Q9P218 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL20A1Q9P218 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
COL20A1Q9P218 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
COL20A1Q9P218 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
COL20A1Q9P218 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
COL20A1Q9P218 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.27■■□□□ 1
COL20A1Q9P218 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
COL20A1Q9P218 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.27■■□□□ 1
COL20A1Q9P218 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.27■■□□□ 1
COL20A1Q9P218 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL20A1Q9P218 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
COL20A1Q9P218 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.27■■□□□ 1
COL20A1Q9P218 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
COL20A1Q9P218 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC21.27■■□□□ 1
COL20A1Q9P218 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC21.27■■□□□ 1
COL20A1Q9P218 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.27■■□□□ 1
COL20A1Q9P218 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC21.27■■□□□ 1
COL20A1Q9P218 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC21.27■■□□□ 1
COL20A1Q9P218 AC093458.2-201ENST00000623150 629 ntBASIC21.27■■□□□ 1
COL20A1Q9P218 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
COL20A1Q9P218 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
COL20A1Q9P218 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL20A1Q9P218 AC006333.2-201ENST00000607957 2099 ntBASIC21.27■□□□□ 0.99
COL20A1Q9P218 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL20A1Q9P218 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL20A1Q9P218 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL20A1Q9P218 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
COL20A1Q9P218 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC21.27■□□□□ 0.99
COL20A1Q9P218 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC21.26■□□□□ 0.99
COL20A1Q9P218 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL20A1Q9P218 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL20A1Q9P218 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL20A1Q9P218 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC21.26■□□□□ 0.99
COL20A1Q9P218 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL20A1Q9P218 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL20A1Q9P218 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL20A1Q9P218 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC21.26■□□□□ 0.99
COL20A1Q9P218 AC104390.1-201ENST00000555663 520 ntBASIC21.26■□□□□ 0.99
COL20A1Q9P218 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL20A1Q9P218 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
COL20A1Q9P218 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
COL20A1Q9P218 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL20A1Q9P218 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
COL20A1Q9P218 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL20A1Q9P218 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL20A1Q9P218 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL20A1Q9P218 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
COL20A1Q9P218 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL20A1Q9P218 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL20A1Q9P218 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.25■□□□□ 0.99
COL20A1Q9P218 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL20A1Q9P218 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL20A1Q9P218 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL20A1Q9P218 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
COL20A1Q9P218 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL20A1Q9P218 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC21.25■□□□□ 0.99
COL20A1Q9P218 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL20A1Q9P218 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
COL20A1Q9P218 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
COL20A1Q9P218 HLA-F-220ENST00000434407 884 ntBASIC21.25■□□□□ 0.99
COL20A1Q9P218 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC21.25■□□□□ 0.99
COL20A1Q9P218 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms