Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC009113.1-201ENST00000570267 2443 ntBASIC16.82■□□□□ 0.28
VSX1Q9NZR4 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VSX1Q9NZR4 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 AC004951.3-201ENST00000418645 1148 ntBASIC16.81■□□□□ 0.28
VSX1Q9NZR4 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
VSX1Q9NZR4 NEFHP1-201ENST00000412845 2629 ntBASIC16.81■□□□□ 0.28
VSX1Q9NZR4 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 KRT8P3-201ENST00000519669 1449 ntBASIC16.8■□□□□ 0.28
VSX1Q9NZR4 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 AC005082.1-201ENST00000413042 2259 ntBASIC16.8■□□□□ 0.28
VSX1Q9NZR4 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 IRX5-204ENST00000560154 879 ntTSL 5 BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 AF186192.3-201ENST00000583427 947 ntBASIC16.8■□□□□ 0.28
VSX1Q9NZR4 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 AC068587.9-201ENST00000641814 219 ntBASIC16.8■□□□□ 0.28
VSX1Q9NZR4 AL031985.4-201ENST00000642138 673 ntBASIC16.8■□□□□ 0.28
VSX1Q9NZR4 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 HTR7P1-202ENST00000624664 4411 ntBASIC16.8■□□□□ 0.28
VSX1Q9NZR4 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
VSX1Q9NZR4 BCL2-203ENST00000589955 5011 ntBASIC16.79■□□□□ 0.28
VSX1Q9NZR4 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.79■□□□□ 0.28
VSX1Q9NZR4 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC16.79■□□□□ 0.28
VSX1Q9NZR4 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms