Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC23.9■■□□□ 1.42
USP42Q9H9J4 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC23.9■■□□□ 1.42
USP42Q9H9J4 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP42Q9H9J4 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
USP42Q9H9J4 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC23.9■■□□□ 1.42
USP42Q9H9J4 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP42Q9H9J4 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
USP42Q9H9J4 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC23.9■■□□□ 1.42
USP42Q9H9J4 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
USP42Q9H9J4 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC23.89■■□□□ 1.42
USP42Q9H9J4 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC23.89■■□□□ 1.42
USP42Q9H9J4 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.42
USP42Q9H9J4 AL160237.2-201ENST00000556165 472 ntBASIC23.89■■□□□ 1.42
USP42Q9H9J4 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC23.89■■□□□ 1.42
USP42Q9H9J4 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.42
USP42Q9H9J4 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
USP42Q9H9J4 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC23.89■■□□□ 1.42
USP42Q9H9J4 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
USP42Q9H9J4 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
USP42Q9H9J4 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
USP42Q9H9J4 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
USP42Q9H9J4 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
USP42Q9H9J4 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
USP42Q9H9J4 GOLGA6L5P-202ENST00000515341 1828 ntBASIC23.89■■□□□ 1.41
USP42Q9H9J4 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
USP42Q9H9J4 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
USP42Q9H9J4 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
USP42Q9H9J4 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
USP42Q9H9J4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC23.88■■□□□ 1.41
USP42Q9H9J4 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC23.88■■□□□ 1.41
USP42Q9H9J4 AL022342.1-201ENST00000400363 863 ntBASIC23.88■■□□□ 1.41
USP42Q9H9J4 LINC00265-3P-201ENST00000447588 903 ntBASIC23.88■■□□□ 1.41
USP42Q9H9J4 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC23.88■■□□□ 1.41
USP42Q9H9J4 PNN-202ENST00000553331 656 ntTSL 3 BASIC23.88■■□□□ 1.41
USP42Q9H9J4 GXYLT1P4-201ENST00000613576 1192 ntBASIC23.88■■□□□ 1.41
USP42Q9H9J4 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
USP42Q9H9J4 AC004263.2-201ENST00000617183 678 ntBASIC23.88■■□□□ 1.41
USP42Q9H9J4 AC112497.1-201ENST00000624824 639 ntBASIC23.88■■□□□ 1.41
USP42Q9H9J4 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC23.88■■□□□ 1.41
USP42Q9H9J4 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC23.88■■□□□ 1.41
USP42Q9H9J4 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
USP42Q9H9J4 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
USP42Q9H9J4 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
USP42Q9H9J4 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC23.88■■□□□ 1.41
USP42Q9H9J4 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC23.88■■□□□ 1.41
USP42Q9H9J4 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC23.88■■□□□ 1.41
USP42Q9H9J4 Z82202.1-201ENST00000623446 1880 ntBASIC23.88■■□□□ 1.41
USP42Q9H9J4 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
USP42Q9H9J4 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC23.88■■□□□ 1.41
USP42Q9H9J4 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC23.88■■□□□ 1.41
USP42Q9H9J4 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC23.87■■□□□ 1.41
USP42Q9H9J4 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC23.87■■□□□ 1.41
USP42Q9H9J4 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC23.87■■□□□ 1.41
USP42Q9H9J4 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC23.87■■□□□ 1.41
USP42Q9H9J4 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC23.87■■□□□ 1.41
USP42Q9H9J4 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
USP42Q9H9J4 AP000867.3-201ENST00000524675 377 ntBASIC23.87■■□□□ 1.41
USP42Q9H9J4 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC23.87■■□□□ 1.41
USP42Q9H9J4 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP42Q9H9J4 GAS2L1P1-201ENST00000420145 1480 ntBASIC23.87■■□□□ 1.41
USP42Q9H9J4 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
USP42Q9H9J4 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC23.87■■□□□ 1.41
USP42Q9H9J4 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP42Q9H9J4 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP42Q9H9J4 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP42Q9H9J4 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
USP42Q9H9J4 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP42Q9H9J4 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC23.87■■□□□ 1.41
USP42Q9H9J4 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
USP42Q9H9J4 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP42Q9H9J4 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC23.87■■□□□ 1.41
USP42Q9H9J4 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
USP42Q9H9J4 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC23.86■■□□□ 1.41
USP42Q9H9J4 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USP42Q9H9J4 AC091304.2-201ENST00000564639 760 ntBASIC23.86■■□□□ 1.41
USP42Q9H9J4 AC012615.1-201ENST00000565797 1299 ntBASIC23.86■■□□□ 1.41
USP42Q9H9J4 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC23.86■■□□□ 1.41
USP42Q9H9J4 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USP42Q9H9J4 AL121772.3-201ENST00000610840 674 ntBASIC23.86■■□□□ 1.41
USP42Q9H9J4 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP42Q9H9J4 TP73-202ENST00000354437 2140 ntTSL 5 BASIC23.86■■□□□ 1.41
USP42Q9H9J4 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC23.86■■□□□ 1.41
USP42Q9H9J4 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC23.86■■□□□ 1.41
USP42Q9H9J4 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC23.86■■□□□ 1.41
USP42Q9H9J4 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
USP42Q9H9J4 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USP42Q9H9J4 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC23.86■■□□□ 1.41
USP42Q9H9J4 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP42Q9H9J4 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC23.86■■□□□ 1.41
USP42Q9H9J4 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP42Q9H9J4 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP42Q9H9J4 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
USP42Q9H9J4 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC23.86■■□□□ 1.41
USP42Q9H9J4 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USP42Q9H9J4 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC23.86■■□□□ 1.41
USP42Q9H9J4 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC23.86■■□□□ 1.41
USP42Q9H9J4 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP42Q9H9J4 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC23.86■■□□□ 1.41
USP42Q9H9J4 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC23.86■■□□□ 1.41
USP42Q9H9J4 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms