Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 FAM201B-201ENST00000458407 597 ntBASIC16.42■□□□□ 0.22
NKX3-1Q99801 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 AC120498.8-201ENST00000614275 531 ntBASIC16.42■□□□□ 0.22
NKX3-1Q99801 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
NKX3-1Q99801 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 AC068880.1-201ENST00000507289 2297 ntBASIC16.42■□□□□ 0.22
NKX3-1Q99801 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NKX3-1Q99801 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC16.41■□□□□ 0.22
NKX3-1Q99801 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 TUBB8P6-201ENST00000436895 1288 ntBASIC16.41■□□□□ 0.22
NKX3-1Q99801 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC16.41■□□□□ 0.22
NKX3-1Q99801 NME1-207ENST00000480143 964 ntTSL 2 BASIC16.41■□□□□ 0.22
NKX3-1Q99801 OR2A1-AS1-207ENST00000486094 819 ntBASIC16.41■□□□□ 0.22
NKX3-1Q99801 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC16.41■□□□□ 0.22
NKX3-1Q99801 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
NKX3-1Q99801 HLA-B-256ENST00000639848 1089 ntBASIC16.41■□□□□ 0.22
NKX3-1Q99801 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
NKX3-1Q99801 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
NKX3-1Q99801 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
NKX3-1Q99801 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC16.41■□□□□ 0.22
NKX3-1Q99801 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
NKX3-1Q99801 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NKX3-1Q99801 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX3-1Q99801 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.4■□□□□ 0.22
NKX3-1Q99801 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX3-1Q99801 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC16.4■□□□□ 0.22
NKX3-1Q99801 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX3-1Q99801 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NKX3-1Q99801 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
NKX3-1Q99801 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC16.4■□□□□ 0.22
NKX3-1Q99801 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
NKX3-1Q99801 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC16.4■□□□□ 0.22
NKX3-1Q99801 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC16.4■□□□□ 0.22
NKX3-1Q99801 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NKX3-1Q99801 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NKX3-1Q99801 MIR4651-201ENST00000582622 73 ntBASIC16.4■□□□□ 0.22
NKX3-1Q99801 AC060766.5-201ENST00000590539 871 ntBASIC16.4■□□□□ 0.22
NKX3-1Q99801 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC16.4■□□□□ 0.22
NKX3-1Q99801 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX3-1Q99801 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
NKX3-1Q99801 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX3-1Q99801 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX3-1Q99801 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX3-1Q99801 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NKX3-1Q99801 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.4■□□□□ 0.22
NKX3-1Q99801 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.4■□□□□ 0.22
NKX3-1Q99801 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NKX3-1Q99801 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
NKX3-1Q99801 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
NKX3-1Q99801 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NKX3-1Q99801 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
NKX3-1Q99801 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
NKX3-1Q99801 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
NKX3-1Q99801 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
NKX3-1Q99801 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
NKX3-1Q99801 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
NKX3-1Q99801 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.39■□□□□ 0.21
NKX3-1Q99801 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
NKX3-1Q99801 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NKX3-1Q99801 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms