Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
ABCA3Q99758 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC25.06■■□□□ 1.6
ABCA3Q99758 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC25.06■■□□□ 1.6
ABCA3Q99758 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC25.06■■□□□ 1.6
ABCA3Q99758 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC25.06■■□□□ 1.6
ABCA3Q99758 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC25.06■■□□□ 1.6
ABCA3Q99758 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
ABCA3Q99758 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
ABCA3Q99758 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
ABCA3Q99758 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC25.06■■□□□ 1.6
ABCA3Q99758 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
ABCA3Q99758 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
ABCA3Q99758 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
ABCA3Q99758 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
ABCA3Q99758 AC009065.1-201ENST00000564055 1225 ntBASIC25.06■■□□□ 1.6
ABCA3Q99758 AC114341.1-201ENST00000618070 349 ntBASIC25.06■■□□□ 1.6
ABCA3Q99758 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC25.05■■□□□ 1.6
ABCA3Q99758 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC25.05■■□□□ 1.6
ABCA3Q99758 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
ABCA3Q99758 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC25.05■■□□□ 1.6
ABCA3Q99758 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
ABCA3Q99758 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
ABCA3Q99758 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
ABCA3Q99758 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC25.05■■□□□ 1.6
ABCA3Q99758 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
ABCA3Q99758 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
ABCA3Q99758 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
ABCA3Q99758 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC25.05■■□□□ 1.6
ABCA3Q99758 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
ABCA3Q99758 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC25.04■■□□□ 1.6
ABCA3Q99758 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
ABCA3Q99758 AL353692.3-201ENST00000407031 1396 ntBASIC25.04■■□□□ 1.6
ABCA3Q99758 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
ABCA3Q99758 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC25.04■■□□□ 1.6
ABCA3Q99758 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC25.04■■□□□ 1.6
ABCA3Q99758 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC25.04■■□□□ 1.6
ABCA3Q99758 IGHV3-41-201ENST00000613121 348 ntBASIC25.04■■□□□ 1.6
ABCA3Q99758 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC25.04■■□□□ 1.6
ABCA3Q99758 AC099778.1-201ENST00000568593 1911 ntBASIC25.04■■□□□ 1.6
ABCA3Q99758 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
ABCA3Q99758 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
ABCA3Q99758 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC25.04■■□□□ 1.6
ABCA3Q99758 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
ABCA3Q99758 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC25.04■■□□□ 1.6
ABCA3Q99758 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
ABCA3Q99758 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
ABCA3Q99758 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC25.03■■□□□ 1.6
ABCA3Q99758 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC25.03■■□□□ 1.6
ABCA3Q99758 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
ABCA3Q99758 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
ABCA3Q99758 HOTTIP_1.1-201ENST00000620415 57 ntBASIC25.03■■□□□ 1.6
ABCA3Q99758 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
ABCA3Q99758 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
ABCA3Q99758 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
ABCA3Q99758 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC25.03■■□□□ 1.6
ABCA3Q99758 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC25.03■■□□□ 1.6
ABCA3Q99758 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC25.03■■□□□ 1.6
ABCA3Q99758 AC034236.2-201ENST00000606662 1610 ntBASIC25.03■■□□□ 1.6
ABCA3Q99758 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
ABCA3Q99758 PMS2P7-201ENST00000506558 1336 ntBASIC25.03■■□□□ 1.6
ABCA3Q99758 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC25.03■■□□□ 1.6
ABCA3Q99758 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
ABCA3Q99758 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
ABCA3Q99758 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
ABCA3Q99758 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC25.03■■□□□ 1.6
ABCA3Q99758 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC25.03■■□□□ 1.6
ABCA3Q99758 PMS2P2-201ENST00000425039 1128 ntBASIC25.03■■□□□ 1.6
ABCA3Q99758 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC25.03■■□□□ 1.6
ABCA3Q99758 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
ABCA3Q99758 MIR3180-4-201ENST00000582223 153 ntBASIC25.03■■□□□ 1.6
ABCA3Q99758 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
ABCA3Q99758 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC25.02■■□□□ 1.6
ABCA3Q99758 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC25.02■■□□□ 1.6
ABCA3Q99758 CYP51A1P1-201ENST00000492267 1507 ntBASIC25.02■■□□□ 1.6
ABCA3Q99758 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC25.02■■□□□ 1.6
ABCA3Q99758 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC25.02■■□□□ 1.6
ABCA3Q99758 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC25.02■■□□□ 1.6
ABCA3Q99758 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC25.02■■□□□ 1.6
ABCA3Q99758 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
ABCA3Q99758 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
ABCA3Q99758 GABARAPL3-202ENST00000624044 1851 ntBASIC25.02■■□□□ 1.6
ABCA3Q99758 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
ABCA3Q99758 HNRNPDP1-201ENST00000439535 754 ntBASIC25.02■■□□□ 1.6
ABCA3Q99758 MINOS1P3-201ENST00000457048 203 ntBASIC25.02■■□□□ 1.6
ABCA3Q99758 AC140113.2-201ENST00000604370 208 ntBASIC25.02■■□□□ 1.6
ABCA3Q99758 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
ABCA3Q99758 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
ABCA3Q99758 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
ABCA3Q99758 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
ABCA3Q99758 TP73-202ENST00000354437 2140 ntTSL 5 BASIC25.02■■□□□ 1.6
ABCA3Q99758 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.6
ABCA3Q99758 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC25.01■■□□□ 1.59
ABCA3Q99758 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
ABCA3Q99758 CCS-201ENST00000310190 942 ntTSL 5 BASIC25.01■■□□□ 1.59
ABCA3Q99758 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC25.01■■□□□ 1.59
ABCA3Q99758 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC25.01■■□□□ 1.59
ABCA3Q99758 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC25.01■■□□□ 1.59
ABCA3Q99758 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC25.01■■□□□ 1.59
ABCA3Q99758 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
ABCA3Q99758 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC25.01■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms