Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CDX2Q99626 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CDX2Q99626 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.67■□□□□ 0.74
CDX2Q99626 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CDX2Q99626 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.66■□□□□ 0.74
CDX2Q99626 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDX2Q99626 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDX2Q99626 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDX2Q99626 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CDX2Q99626 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDX2Q99626 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC19.66■□□□□ 0.74
CDX2Q99626 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CDX2Q99626 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CDX2Q99626 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CDX2Q99626 UNC93B6-202ENST00000528242 690 ntBASIC19.66■□□□□ 0.74
CDX2Q99626 AC005829.1-201ENST00000570002 483 ntBASIC19.66■□□□□ 0.74
CDX2Q99626 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.66■□□□□ 0.74
CDX2Q99626 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CDX2Q99626 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.66■□□□□ 0.74
CDX2Q99626 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CDX2Q99626 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
CDX2Q99626 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CDX2Q99626 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CDX2Q99626 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CDX2Q99626 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDX2Q99626 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.65■□□□□ 0.74
CDX2Q99626 AC006128.1-201ENST00000624704 1661 ntBASIC19.65■□□□□ 0.74
CDX2Q99626 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDX2Q99626 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDX2Q99626 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDX2Q99626 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDX2Q99626 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.65■□□□□ 0.74
CDX2Q99626 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.65■□□□□ 0.74
CDX2Q99626 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.65■□□□□ 0.74
CDX2Q99626 AC254562.1-201ENST00000417586 456 ntBASIC19.65■□□□□ 0.74
CDX2Q99626 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.65■□□□□ 0.74
CDX2Q99626 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDX2Q99626 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CDX2Q99626 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.65■□□□□ 0.74
CDX2Q99626 PUDP-206ENST00000540122 825 ntTSL 2 BASIC19.65■□□□□ 0.74
CDX2Q99626 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.65■□□□□ 0.74
CDX2Q99626 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.65■□□□□ 0.74
CDX2Q99626 AP002472.1-201ENST00000577490 586 ntBASIC19.65■□□□□ 0.74
CDX2Q99626 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.65■□□□□ 0.74
CDX2Q99626 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDX2Q99626 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC19.65■□□□□ 0.74
CDX2Q99626 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.65■□□□□ 0.74
CDX2Q99626 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CDX2Q99626 AC104417.2-201ENST00000562989 1793 ntBASIC19.65■□□□□ 0.74
CDX2Q99626 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
CDX2Q99626 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CDX2Q99626 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
CDX2Q99626 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.64■□□□□ 0.74
CDX2Q99626 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDX2Q99626 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CDX2Q99626 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDX2Q99626 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CDX2Q99626 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC19.64■□□□□ 0.73
CDX2Q99626 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.64■□□□□ 0.73
CDX2Q99626 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.64■□□□□ 0.73
CDX2Q99626 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.64■□□□□ 0.73
CDX2Q99626 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.64■□□□□ 0.73
CDX2Q99626 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.64■□□□□ 0.73
CDX2Q99626 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CDX2Q99626 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CDX2Q99626 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.64■□□□□ 0.73
CDX2Q99626 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.64■□□□□ 0.73
CDX2Q99626 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDX2Q99626 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDX2Q99626 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDX2Q99626 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDX2Q99626 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CDX2Q99626 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDX2Q99626 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDX2Q99626 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDX2Q99626 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.63■□□□□ 0.73
CDX2Q99626 TP73-AS1-210ENST00000637775 1455 ntBASIC19.63■□□□□ 0.73
CDX2Q99626 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CDX2Q99626 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDX2Q99626 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC19.63■□□□□ 0.73
CDX2Q99626 INIP-202ENST00000374236 874 ntTSL 2 BASIC19.63■□□□□ 0.73
CDX2Q99626 PTMS-202ENST00000389462 773 ntTSL 2 BASIC19.63■□□□□ 0.73
CDX2Q99626 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
CDX2Q99626 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.63■□□□□ 0.73
CDX2Q99626 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.63■□□□□ 0.73
CDX2Q99626 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.63■□□□□ 0.73
CDX2Q99626 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.63■□□□□ 0.73
CDX2Q99626 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDX2Q99626 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDX2Q99626 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CDX2Q99626 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDX2Q99626 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDX2Q99626 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CDX2Q99626 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CDX2Q99626 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CDX2Q99626 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.62■□□□□ 0.73
CDX2Q99626 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDX2Q99626 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDX2Q99626 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDX2Q99626 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms