Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SKA1Q96BD8 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC19.29■□□□□ 0.68
SKA1Q96BD8 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SKA1Q96BD8 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SKA1Q96BD8 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.29■□□□□ 0.68
SKA1Q96BD8 BX664615.1-201ENST00000443558 458 ntBASIC19.29■□□□□ 0.68
SKA1Q96BD8 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.29■□□□□ 0.68
SKA1Q96BD8 FAM207BP-201ENST00000447172 505 ntBASIC19.29■□□□□ 0.68
SKA1Q96BD8 ECEL1P2-202ENST00000465689 757 ntBASIC19.29■□□□□ 0.68
SKA1Q96BD8 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
SKA1Q96BD8 AC087388.1-201ENST00000571370 1112 ntBASIC19.29■□□□□ 0.68
SKA1Q96BD8 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
SKA1Q96BD8 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SKA1Q96BD8 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SKA1Q96BD8 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SKA1Q96BD8 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SKA1Q96BD8 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SKA1Q96BD8 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SKA1Q96BD8 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.29■□□□□ 0.68
SKA1Q96BD8 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SKA1Q96BD8 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SKA1Q96BD8 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SKA1Q96BD8 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SKA1Q96BD8 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SKA1Q96BD8 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SKA1Q96BD8 RCC2P6-201ENST00000526625 1557 ntBASIC19.28■□□□□ 0.68
SKA1Q96BD8 AP001271.2-201ENST00000624018 1556 ntBASIC19.28■□□□□ 0.68
SKA1Q96BD8 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.28■□□□□ 0.68
SKA1Q96BD8 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SKA1Q96BD8 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SKA1Q96BD8 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SKA1Q96BD8 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SKA1Q96BD8 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SKA1Q96BD8 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC19.28■□□□□ 0.68
SKA1Q96BD8 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
SKA1Q96BD8 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SKA1Q96BD8 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SKA1Q96BD8 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SKA1Q96BD8 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.28■□□□□ 0.68
SKA1Q96BD8 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SKA1Q96BD8 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SKA1Q96BD8 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.27■□□□□ 0.68
SKA1Q96BD8 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SKA1Q96BD8 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
SKA1Q96BD8 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
SKA1Q96BD8 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SKA1Q96BD8 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SKA1Q96BD8 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SKA1Q96BD8 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
SKA1Q96BD8 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SKA1Q96BD8 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
SKA1Q96BD8 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SKA1Q96BD8 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.27■□□□□ 0.68
SKA1Q96BD8 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.27■□□□□ 0.68
SKA1Q96BD8 HMGA1P5-201ENST00000412453 271 ntBASIC19.27■□□□□ 0.68
SKA1Q96BD8 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.27■□□□□ 0.68
SKA1Q96BD8 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.27■□□□□ 0.68
SKA1Q96BD8 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.27■□□□□ 0.68
SKA1Q96BD8 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.27■□□□□ 0.68
SKA1Q96BD8 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.27■□□□□ 0.68
SKA1Q96BD8 AC010203.1-204ENST00000548782 407 ntBASIC19.27■□□□□ 0.68
SKA1Q96BD8 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
SKA1Q96BD8 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SKA1Q96BD8 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
SKA1Q96BD8 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SKA1Q96BD8 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
SKA1Q96BD8 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.67
SKA1Q96BD8 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SKA1Q96BD8 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
SKA1Q96BD8 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SKA1Q96BD8 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SKA1Q96BD8 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SKA1Q96BD8 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SKA1Q96BD8 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
SKA1Q96BD8 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
SKA1Q96BD8 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.26■□□□□ 0.67
SKA1Q96BD8 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
SKA1Q96BD8 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SKA1Q96BD8 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
SKA1Q96BD8 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.26■□□□□ 0.67
SKA1Q96BD8 SLC25A1P2-201ENST00000430693 912 ntBASIC19.26■□□□□ 0.67
SKA1Q96BD8 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SKA1Q96BD8 AC104076.2-201ENST00000448912 469 ntBASIC19.26■□□□□ 0.67
SKA1Q96BD8 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SKA1Q96BD8 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
SKA1Q96BD8 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.26■□□□□ 0.67
SKA1Q96BD8 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.26■□□□□ 0.67
SKA1Q96BD8 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
SKA1Q96BD8 NTF6B-201ENST00000591913 560 ntBASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms